RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 B4GALNT4Q76KP1 1039 aa22.98■■□□□ 1.27
CTCF-202ENST00000401394 TAF4BQ92750 862 aa22.98■■□□□ 1.27
CTCF-202ENST00000401394 NCAPGQ9BPX3 1015 aa22.98■■□□□ 1.27
CTCF-202ENST00000401394 STK17AQ9UEE5 414 aa22.98■■□□□ 1.27
CTCF-202ENST00000401394 DOT1LQ8TEK3 1739 aa22.98■■□□□ 1.27
CTCF-202ENST00000401394 NR2F2P24468 414 aa22.97■■□□□ 1.27
CTCF-202ENST00000401394 TMEM119Q4V9L6 283 aa22.97■■□□□ 1.27
CTCF-202ENST00000401394 GLE1Q53GS7 698 aaKnown RBP22.97■■□□□ 1.27
CTCF-202ENST00000401394 EMILIN3Q9NT22 766 aa22.97■■□□□ 1.27
CTCF-202ENST00000401394 PCDHA2Q9Y5H9 948 aa22.97■■□□□ 1.27
CTCF-202ENST00000401394 MAGOHP61326 146 aaKnown RBP22.97■■□□□ 1.27
CTCF-202ENST00000401394 ZNF211Q13398 564 aaPredicted RBP22.97■■□□□ 1.27
CTCF-202ENST00000401394 PRPF4BQ13523 1007 aaKnown RBP22.97■■□□□ 1.27
CTCF-202ENST00000401394 ARSHQ5FYA8 562 aa22.97■■□□□ 1.27
CTCF-202ENST00000401394 KIRREL3Q8IZU9 778 aa22.97■■□□□ 1.27
CTCF-202ENST00000401394 MAGOHBQ96A72 148 aaKnown RBP22.97■■□□□ 1.27
CTCF-202ENST00000401394 SPAG5Q96R06 1193 aa22.97■■□□□ 1.27
CTCF-202ENST00000401394 PCDHA12Q9UN75 941 aa22.97■■□□□ 1.27
CTCF-202ENST00000401394 USP17L10C9JJH3 530 aa22.96■■□□□ 1.27
CTCF-202ENST00000401394 MED24O75448 989 aa22.96■■□□□ 1.27
CTCF-202ENST00000401394 PLA2G4BP0C869 781 aa22.96■■□□□ 1.27
CTCF-202ENST00000401394 HSPA9P38646 679 aaKnown RBP22.96■■□□□ 1.27
CTCF-202ENST00000401394 PABPC4Q13310 644 aaKnown RBP eCLIP22.96■■□□□ 1.27
CTCF-202ENST00000401394 KCTD10Q9H3F6 313 aa22.96■■□□□ 1.27
CTCF-202ENST00000401394 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.96■■□□□ 1.273e-34■■■■■ 819.8
CTCF-202ENST00000401394 HAUS2Q9NVX0 235 aa22.96■■□□□ 1.27
CTCF-202ENST00000401394 GCOM1H8Y6P7 765 aaPredicted RBP22.96■■□□□ 1.27
CTCF-202ENST00000401394 KRIT1O00522 736 aa22.96■■□□□ 1.27
CTCF-202ENST00000401394 KRT18P05783 430 aaKnown RBP22.96■■□□□ 1.27
CTCF-202ENST00000401394 MYZAPP0CAP1 466 aa22.96■■□□□ 1.27
CTCF-202ENST00000401394 ABCB4P21439 1286 aa22.96■■□□□ 1.27
CTCF-202ENST00000401394 NEDD1Q8NHV4 660 aa22.96■■□□□ 1.27
CTCF-202ENST00000401394 CABS1Q96KC9 395 aa22.96■■□□□ 1.27
CTCF-202ENST00000401394 FAM196BA6NMK8 535 aa22.95■■□□□ 1.27
CTCF-202ENST00000401394 SHBGP04278 402 aa22.95■■□□□ 1.27
CTCF-202ENST00000401394 HOXD13P35453 343 aa22.95■■□□□ 1.27
CTCF-202ENST00000401394 COBLL1Q53SF7 1204 aa22.95■■□□□ 1.27
CTCF-202ENST00000401394 ALKBH5Q6P6C2 394 aaKnown RBP22.95■■□□□ 1.27
CTCF-202ENST00000401394 DPP8Q6V1X1 898 aaPredicted RBP22.95■■□□□ 1.27
CTCF-202ENST00000401394 MTFR1LQ9H019 292 aa22.95■■□□□ 1.27
CTCF-202ENST00000401394 TMEM59LQ9UK28 342 aa22.95■■□□□ 1.27
CTCF-202ENST00000401394 IRS2Q9Y4H2 1338 aa22.95■■□□□ 1.27
CTCF-202ENST00000401394 UTRNP46939 3433 aa22.95■■□□□ 1.26
CTCF-202ENST00000401394 FGFR1OPO95684 399 aaKnown RBP22.95■■□□□ 1.26
CTCF-202ENST00000401394 BAG3O95817 575 aa22.95■■□□□ 1.26
CTCF-202ENST00000401394 MYBP10242 640 aa22.95■■□□□ 1.26
CTCF-202ENST00000401394 UCHL3P15374 230 aa22.95■■□□□ 1.26
CTCF-202ENST00000401394 ADGRF4Q8IZF3 695 aa22.95■■□□□ 1.26
CTCF-202ENST00000401394 MXD3Q9BW11 206 aa22.95■■□□□ 1.26
CTCF-202ENST00000401394 JMJD4Q9H9V9 463 aa22.95■■□□□ 1.26
CTCF-202ENST00000401394 NAGPAQ9UK23 515 aa22.95■■□□□ 1.26
CTCF-202ENST00000401394 HDAC9Q9UKV0 1011 aa22.95■■□□□ 1.26
CTCF-202ENST00000401394 ATP8A1Q9Y2Q0 1164 aa22.95■■□□□ 1.26
CTCF-202ENST00000401394 FAM107AO95990 144 aa22.95■■□□□ 1.26
CTCF-202ENST00000401394 CYP4A11Q02928 519 aa22.95■■□□□ 1.26
CTCF-202ENST00000401394 BYSLQ13895 437 aaKnown RBP22.95■■□□□ 1.26
CTCF-202ENST00000401394 DPY19L2P1Q6NXN4 242 aa22.95■■□□□ 1.26
CTCF-202ENST00000401394 C16orf86Q6ZW13 317 aa22.95■■□□□ 1.26
CTCF-202ENST00000401394 GLG1Q92896 1179 aa22.95■■□□□ 1.26
CTCF-202ENST00000401394 ISCUQ9H1K1 167 aa22.95■■□□□ 1.26
CTCF-202ENST00000401394 LEMD3Q9Y2U8 911 aa22.95■■□□□ 1.26
CTCF-202ENST00000401394 RAPGEF5Q92565 580 aa22.94■■□□□ 1.26
CTCF-202ENST00000401394 SLC40A1Q9NP59 571 aa22.94■■□□□ 1.26
CTCF-202ENST00000401394 SLC12A6Q9UHW9 1150 aa22.94■■□□□ 1.26
CTCF-202ENST00000401394 GGT7Q9UJ14 662 aa22.94■■□□□ 1.26
CTCF-202ENST00000401394 CYP11B2P19099 503 aa22.94■■□□□ 1.26
CTCF-202ENST00000401394 TNNC1P63316 161 aa22.94■■□□□ 1.26
CTCF-202ENST00000401394 DHX9Q08211 1270 aaKnown RBP22.94■■□□□ 1.26
CTCF-202ENST00000401394 LRRC57Q8N9N7 239 aa22.94■■□□□ 1.26
CTCF-202ENST00000401394 SCFD2Q8WU76 684 aa22.94■■□□□ 1.26
CTCF-202ENST00000401394 P2RX7Q99572 595 aaKnown RBP22.94■■□□□ 1.26
CTCF-202ENST00000401394 RIOX1Q9H6W3 641 aa22.94■■□□□ 1.26
CTCF-202ENST00000401394 RIC8AQ9NPQ8 531 aa22.94■■□□□ 1.26
CTCF-202ENST00000401394 AKAP3O75969 853 aa22.93■■□□□ 1.26
CTCF-202ENST00000401394 FSBPO95073 299 aa22.93■■□□□ 1.26
CTCF-202ENST00000401394 E2F5Q15329 346 aa22.93■■□□□ 1.26
CTCF-202ENST00000401394 U2AF1L4Q8WU68 220 aaKnown RBP22.93■■□□□ 1.26
CTCF-202ENST00000401394 ZKSCAN4Q969J2 545 aaPredicted RBP22.93■■□□□ 1.26
CTCF-202ENST00000401394 CEP89Q96ST8 783 aa22.93■■□□□ 1.26
CTCF-202ENST00000401394 LAMB1P07942 1786 aa22.93■■□□□ 1.26
CTCF-202ENST00000401394 COL14A1Q05707 1796 aaKnown RBP22.93■■□□□ 1.26
CTCF-202ENST00000401394 IGSF9BQ9UPX0 1349 aa22.93■■□□□ 1.26
CTCF-202ENST00000401394 GFPT2O94808 682 aa22.93■■□□□ 1.26
CTCF-202ENST00000401394 DAAM2Q86T65 1068 aa22.93■■□□□ 1.26
CTCF-202ENST00000401394 CEP57Q86XR8 500 aa22.93■■□□□ 1.26
CTCF-202ENST00000401394 WHAMMQ8TF30 809 aa22.93■■□□□ 1.26
CTCF-202ENST00000401394 PCDHB13Q9Y5F0 798 aa22.93■■□□□ 1.26
CTCF-202ENST00000401394 TLDC2A0PJX2 215 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 GOLGA6L10A6NI86 522 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 GNPATO15228 680 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 PON1P27169 355 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 PPP1R2P41236 205 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 CLEC4GQ6UXB4 293 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 MREGQ8N565 214 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 ANKRD2Q9GZV1 360 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 ERVK-5Q9HDB9 667 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 KLC4Q9NSK0 619 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 ROBO1Q9Y6N7 1651 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 LRRN2O75325 713 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 USP11P51784 963 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms