RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ARID5BQ14865 1188 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 FAM98CQ17RN3 349 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 ANKRD36BP1Q96IX9 119 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 LGALS16A8MUM7 142 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 S100BP04271 92 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 BASP1P80723 227 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 CACNB1Q02641 598 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 OCA2Q04671 838 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 NBPF9Q3BBW0 867 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 CALR3Q96L12 384 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 AIFM3Q96NN9 605 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 KANSL2Q9H9L4 492 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 TBK1Q9UHD2 729 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 ADAMTS1Q9UHI8 967 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 PACSIN2Q9UNF0 486 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 CHUKO15111 745 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 SASH1O94885 1247 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 ACTN1P12814 892 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 RWDD2BP57060 319 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 ZBTB41Q5SVQ8 909 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 NUGGCQ68CJ6 796 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 SMYD2Q9NRG4 433 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 PLAAQ9Y263 795 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 TTC37Q6PGP7 1564 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 CPSF1Q10570 1443 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 MED7O43513 233 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 DCTN3O75935 186 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 HSPA2P54652 639 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 PRKG1Q13976 671 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 CENPUQ71F23 418 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 PDIK1LQ8N165 341 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 AP1M1Q9BXS5 423 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 ANO3Q9BYT9 981 aa11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 SEPT9Q9UHD8 586 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-203ENST00000396595 MIF4GDA9UHW6 222 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 TTI1O43156 1089 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 PRKAB2O43741 272 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 TRPA1O75762 1119 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 LMNAP02545 664 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 SERPINI1Q99574 410 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 TLK1Q9UKI8 766 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 GOLGA8SH3BPF8 625 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 PDCLQ13371 301 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 NRBF2Q96F24 287 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 ABHD10Q9NUJ1 306 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 STK36Q9NRP7 1315 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 IQANK1A0A1B0GTG1 560 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 POTEB3A0JP26 581 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 SPDYE16A6NNV3 312 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 SPDYE2Q495Y8 402 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 ATG16L1Q676U5 607 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 POTEBQ6S5H4 581 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 ARHGAP18Q8N392 663 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 BBS5Q8N3I7 341 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 GDAP1Q8TB36 358 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 PAGR1Q9BTK6 254 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 SPC25Q9HBM1 224 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 SH3GLB2Q9NR46 395 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 ARHGEF5Q12774 1597 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 ARHGAP31Q2M1Z3 1444 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 LMTK3Q96Q04 1460 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 PMS1P54277 932 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 RSBN1LQ6PCB5 846 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 DARS2Q6PI48 645 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 GFM2Q969S9 779 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 KIF2CQ99661 725 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 MXD3Q9BW11 206 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 SERPINB13Q9UIV8 391 aa11.03□□□□□ -0.64
LIMCH1-203ENST00000396595 TCP10L2B9ZVM9 353 aa11.02□□□□□ -0.64
LIMCH1-203ENST00000396595 FGGP02679 453 aa11.02□□□□□ -0.64
LIMCH1-203ENST00000396595 ARL4AP40617 200 aa11.02□□□□□ -0.64
LIMCH1-203ENST00000396595 MRPS15P82914 257 aaKnown RBP11.02□□□□□ -0.64
LIMCH1-203ENST00000396595 BBS9Q3SYG4 887 aa11.02□□□□□ -0.64
LIMCH1-203ENST00000396595 TOGARAM2Q6ZUX3 1019 aa11.02□□□□□ -0.64
LIMCH1-203ENST00000396595 PGBD1Q96JS3 809 aa11.02□□□□□ -0.64
LIMCH1-203ENST00000396595 ARIH1Q9Y4X5 557 aaPredicted RBP11.02□□□□□ -0.64
LIMCH1-203ENST00000396595 YEATS2Q9ULM3 1422 aa11.02□□□□□ -0.64
LIMCH1-203ENST00000396595 ATP5HO75947 161 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 HSPA8P11142 646 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 SPARCL1Q14515 664 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 UNC13DQ70J99 1090 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 TBC1D1Q86TI0 1168 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 WDR75Q8IWA0 830 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 ZNF513Q8N8E2 541 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 ELAC2Q9BQ52 826 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 PCIF1Q9H4Z3 704 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 SYNGAP1Q96PV0 1343 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 ZBBXA8MT70 800 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 TOM1L1O75674 476 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 MMEP08473 750 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 CLEC17AQ6ZS10 378 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 PCGF5Q86SE9 256 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 PROM2Q8N271 834 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 ENAHQ8N8S7 591 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 MCUQ8NE86 351 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 FAM149B1Q96BN6 582 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 CDHR1Q96JP9 859 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 CEP72Q9P209 647 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 TOB2Q14106 344 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 DOK7Q18PE1 504 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms