RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 CUEDC2Q9H467 287 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 MRVI1Q9Y6F6 885 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 MROH7Q68CQ1 1323 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 A0A0U1RQG5 324 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-202ENST00000394943 A0A1W2PQ45 241 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-202ENST00000394943 A0A1W2PQY0 241 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 H3BQV1 296 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 PLCB4Q15147 1175 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 EXOC8Q8IYI6 725 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 PIBF1Q8WXW3 757 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 PNMA5Q96PV4 448 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 BCAS3Q9H6U6 928 aa7.91□□□□□ -1.14
LIMA1-202ENST00000394943 KIAA0355O15063 1070 aa7.9□□□□□ -1.14
LIMA1-202ENST00000394943 ZNF862O60290 1169 aa7.9□□□□□ -1.14
LIMA1-202ENST00000394943 KCNA4P22459 653 aa7.9□□□□□ -1.14
LIMA1-202ENST00000394943 SF3A1Q15459 793 aaKnown RBP7.9□□□□□ -1.14
LIMA1-202ENST00000394943 LETM2Q2VYF4 491 aa7.9□□□□□ -1.14
LIMA1-202ENST00000394943 COBLL1Q53SF7 1204 aa7.9□□□□□ -1.14
LIMA1-202ENST00000394943 PRR16Q569H4 304 aa7.9□□□□□ -1.14
LIMA1-202ENST00000394943 LRCH2Q5VUJ6 765 aa7.9□□□□□ -1.14
LIMA1-202ENST00000394943 ADALQ6DHV7 355 aa7.9□□□□□ -1.14
LIMA1-202ENST00000394943 FAM126BQ8IXS8 530 aa7.9□□□□□ -1.14
LIMA1-202ENST00000394943 ATP8B4Q8TF62 1192 aa7.9□□□□□ -1.14
LIMA1-202ENST00000394943 SCAND2PQ9GZW5 306 aaPredicted RBP7.9□□□□□ -1.14
LIMA1-202ENST00000394943 WRAP73Q9P2S5 460 aaPredicted RBP7.9□□□□□ -1.14
LIMA1-202ENST00000394943 GTF2IRD1Q9UHL9 959 aa7.9□□□□□ -1.14
LIMA1-202ENST00000394943 TELO2Q9Y4R8 837 aa7.9□□□□□ -1.14
LIMA1-202ENST00000394943 PSMC5P62195 406 aa7.9□□□□□ -1.14
LIMA1-202ENST00000394943 EHHADHQ08426 723 aa7.9□□□□□ -1.14
LIMA1-202ENST00000394943 KCNA10Q16322 511 aa7.9□□□□□ -1.14
LIMA1-202ENST00000394943 SLC39A5Q6ZMH5 540 aa7.9□□□□□ -1.14
LIMA1-202ENST00000394943 DHX37Q8IY37 1157 aaKnown RBP7.9□□□□□ -1.14
LIMA1-202ENST00000394943 LEO1Q8WVC0 666 aaPredicted RBP7.9□□□□□ -1.14
LIMA1-202ENST00000394943 DHX33Q9H6R0 707 aaKnown RBP7.9□□□□□ -1.14
LIMA1-202ENST00000394943 NRCAMQ92823 1304 aa7.9□□□□□ -1.14
LIMA1-202ENST00000394943 RRN3P2A6NIE6 340 aa7.9□□□□□ -1.15
LIMA1-202ENST00000394943 ARVCFO00192 962 aa7.9□□□□□ -1.15
LIMA1-202ENST00000394943 MYCLP12524 364 aaPredicted RBP7.9□□□□□ -1.15
LIMA1-202ENST00000394943 PSEN2P49810 448 aa7.9□□□□□ -1.15
LIMA1-202ENST00000394943 CCDC60Q8IWA6 550 aaPredicted RBP7.9□□□□□ -1.15
LIMA1-202ENST00000394943 ENGASEQ8NFI3 743 aa7.9□□□□□ -1.15
LIMA1-202ENST00000394943 LRRC15Q8TF66 581 aa7.9□□□□□ -1.15
LIMA1-202ENST00000394943 COPS5Q92905 334 aa7.9□□□□□ -1.15
LIMA1-202ENST00000394943 PYM1Q9BRP8 204 aaKnown RBP7.9□□□□□ -1.15
LIMA1-202ENST00000394943 STRA6Q9BX79 667 aa7.9□□□□□ -1.15
LIMA1-202ENST00000394943 PRO3102Q9H379 93 aa7.9□□□□□ -1.15
LIMA1-202ENST00000394943 PCDHA2Q9Y5H9 948 aa7.9□□□□□ -1.15
LIMA1-202ENST00000394943 CMA1P23946 247 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 ZNF131P52739 623 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 PTK7Q13308 1070 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 GRB10Q13322 594 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 HIC1Q14526 733 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 FAM160B1Q5W0V3 765 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 SEPT14Q6ZU15 432 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 CYFIP1Q7L576 1253 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 SERINC5Q86VE9 423 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 SPATA20Q8TB22 786 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 AFG1LQ8WV93 481 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 VWCEQ96DN2 955 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 TIGD1Q96MW7 591 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 SPATA33Q96N06 139 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 EIF2AK1Q9BQI3 630 aaKnown RBP7.89□□□□□ -1.15
LIMA1-202ENST00000394943 AP5M1Q9H0R1 490 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 ST6GALNAC4Q9H4F1 302 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 C11orf49Q9H6J7 331 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 DISC1Q9NRI5 854 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 ERAP1Q9NZ08 941 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 STK17AQ9UEE5 414 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 DDX49Q9Y6V7 483 aaKnown RBP7.89□□□□□ -1.15
LIMA1-202ENST00000394943 SMIM35A0A1B0GVV1 85 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 HBP1O60381 514 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 MYL1P05976 194 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 MAPTP10636 758 aaKnown RBP7.89□□□□□ -1.15
LIMA1-202ENST00000394943 TCF7P36402 384 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-202ENST00000394943 RFC5P40937 340 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 SLC12A3P55017 1021 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 GUCY1B3Q02153 619 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 NAALADL2Q58DX5 795 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 XKR3Q5GH77 459 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 FOXR2Q6PJQ5 311 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 NME8Q8N427 588 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 TTC12Q9H892 705 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-202ENST00000394943 ZHX1Q9UKY1 873 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-202ENST00000394943 TBX21Q9UL17 535 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 PCDHA12Q9UN75 941 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 GAS7O60861 476 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 MAFO75444 373 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-202ENST00000394943 PARNO95453 639 aaKnown RBP7.89□□□□□ -1.15
LIMA1-202ENST00000394943 C22orf31O95567 290 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 CXCL10P02778 98 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 ASGR1P07306 291 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 GUCY2CP25092 1073 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 QARSP47897 775 aaKnown RBP7.89□□□□□ -1.15
LIMA1-202ENST00000394943 MFSD10Q14728 455 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 PCBP1Q15365 356 aaKnown RBP eCLIP7.89□□□□□ -1.15
LIMA1-202ENST00000394943 UGCGQ16739 394 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 SHC4Q6S5L8 630 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 KRI1Q8N9T8 703 aaKnown RBP7.89□□□□□ -1.15
LIMA1-202ENST00000394943 BLOC1S4Q9NUP1 217 aa7.89□□□□□ -1.15
LIMA1-202ENST00000394943 ISY1Q9ULR0 285 aaKnown RBP7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms