RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 SUGT1Q9Y2Z0 365 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 DAAM1Q9Y4D1 1078 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 MYH7BA7E2Y1 1941 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 GTPBP10A4D1E9 387 aaKnown RBP10.95□□□□□ -0.66
COL17A1-203ENST00000393211 GCOM1H8Y6P7 765 aaPredicted RBP10.95□□□□□ -0.66
COL17A1-203ENST00000393211 PGRMC1O00264 195 aaKnown RBP10.95□□□□□ -0.66
COL17A1-203ENST00000393211 PDXKO00764 312 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 ZBTB5O15062 677 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 TBX3O15119 743 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 SLC16A3O15427 465 aaKnown RBP10.95□□□□□ -0.66
COL17A1-203ENST00000393211 TTLL1O95922 423 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 FAM107AO95990 144 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 AFPP02771 609 aaKnown RBP10.95□□□□□ -0.66
COL17A1-203ENST00000393211 MYZAPP0CAP1 466 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 CYP11B2P19099 503 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 LIG3P49916 1009 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 CLUL1Q15846 466 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 PPP2R5EQ16537 467 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 ECM1Q16610 540 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 HERC4Q5GLZ8 1057 aaPredicted RBP10.95□□□□□ -0.66
COL17A1-203ENST00000393211 DPY19L2P1Q6NXN4 242 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 ARMC9Q7Z3E5 817 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 SLFN11Q7Z7L1 901 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 GPBP1Q86WP2 473 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 FMNL3Q8IVF7 1028 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 ADGRF4Q8IZF3 695 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 RASGEF1CQ8N431 466 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 FAM133AQ8N9E0 248 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 LRRC57Q8N9N7 239 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 GLIS3Q8NEA6 775 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 HINFPQ9BQA5 517 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.95□□□□□ -0.66
COL17A1-203ENST00000393211 EHD4Q9H223 541 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 KCNMB3Q9NPA1 279 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 SUCLA2Q9P2R7 463 aaPredicted RBP10.95□□□□□ -0.66
COL17A1-203ENST00000393211 ARMCX3Q9UH62 379 aaPredicted RBP10.95□□□□□ -0.66
COL17A1-203ENST00000393211 TTC7AQ9ULT0 858 aaPredicted RBP10.95□□□□□ -0.66
COL17A1-203ENST00000393211 NENFQ9UMX5 172 aa10.95□□□□□ -0.66
COL17A1-203ENST00000393211 RTCBQ9Y3I0 505 aaKnown RBP10.95□□□□□ -0.66
COL17A1-203ENST00000393211 FRMPD2Q68DX3 1309 aaPredicted RBP10.94□□□□□ -0.66
COL17A1-203ENST00000393211 ANKRD65E5RJM6 399 aa10.94□□□□□ -0.66
COL17A1-203ENST00000393211 CALUO43852 315 aaPredicted RBP10.94□□□□□ -0.66
COL17A1-203ENST00000393211 RPL13P26373 211 aaKnown RBP10.94□□□□□ -0.66
COL17A1-203ENST00000393211 MRPS25P82663 173 aaKnown RBP10.94□□□□□ -0.66
COL17A1-203ENST00000393211 BMT2Q1RMZ1 405 aa10.94□□□□□ -0.66
COL17A1-203ENST00000393211 NAA35Q5VZE5 725 aa10.94□□□□□ -0.66
COL17A1-203ENST00000393211 TMC4Q7Z404 712 aa10.94□□□□□ -0.66
COL17A1-203ENST00000393211 MAATS1Q7Z4T9 603 aa10.94□□□□□ -0.66
COL17A1-203ENST00000393211 CCDC26Q8TAB7 109 aa10.94□□□□□ -0.66
COL17A1-203ENST00000393211 ERMNQ8TAM6 284 aa10.94□□□□□ -0.66
COL17A1-203ENST00000393211 ZNF473Q8WTR7 871 aaKnown RBP10.94□□□□□ -0.66
COL17A1-203ENST00000393211 SEC14L1Q92503 715 aa10.94□□□□□ -0.66
COL17A1-203ENST00000393211 SPAG5Q96R06 1193 aa10.94□□□□□ -0.66
COL17A1-203ENST00000393211 PSTPIP2Q9H939 334 aa10.94□□□□□ -0.66
COL17A1-203ENST00000393211 SRP68Q9UHB9 627 aaKnown RBP10.94□□□□□ -0.66
COL17A1-203ENST00000393211 NAGPAQ9UK23 515 aa10.94□□□□□ -0.66
COL17A1-203ENST00000393211 HDAC9Q9UKV0 1011 aa10.94□□□□□ -0.66
COL17A1-203ENST00000393211 KIAA1024Q9UPX6 916 aa10.94□□□□□ -0.66
COL17A1-203ENST00000393211 PLAAQ9Y263 795 aa10.94□□□□□ -0.66
COL17A1-203ENST00000393211 ARFGEF1Q9Y6D6 1849 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 H0YGN5 161 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 TULP1O00294 542 aaPredicted RBP10.93□□□□□ -0.66
COL17A1-203ENST00000393211 KCNK3O14649 394 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 ZBTB48P10074 688 aaPredicted RBP10.93□□□□□ -0.66
COL17A1-203ENST00000393211 UCHL3P15374 230 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 NR2F2P24468 414 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 FNTAP49354 379 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 GUCY2FP51841 1108 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 SLC12A3P55017 1021 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 SETQ01105 290 aaPredicted RBP10.93□□□□□ -0.66
COL17A1-203ENST00000393211 PTK2Q05397 1052 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 DDR1Q08345 913 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 AP3B2Q13367 1082 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 EXOC3L4Q17RC7 722 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 KNOP1Q1ED39 458 aaKnown RBP10.93□□□□□ -0.66
COL17A1-203ENST00000393211 CEP85LQ5SZL2 805 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 KCTD16Q68DU8 428 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 ALKBH5Q6P6C2 394 aaKnown RBP10.93□□□□□ -0.66
COL17A1-203ENST00000393211 EPM2AIP1Q7L775 607 aaPredicted RBP10.93□□□□□ -0.66
COL17A1-203ENST00000393211 TAX1BP1Q86VP1 789 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 NLRP14Q86W24 1093 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 SH2D3CQ8N5H7 860 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 MYCBPAPQ8TBZ2 947 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 CERKQ8TCT0 537 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 CCT8L2Q96SF2 557 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 DHX36Q9H2U1 1008 aaKnown RBP10.93□□□□□ -0.66
COL17A1-203ENST00000393211 A1CFQ9NQ94 594 aaKnown RBP10.93□□□□□ -0.66
COL17A1-203ENST00000393211 FAM114A2Q9NRY5 505 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 GGA1Q9UJY5 639 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 NFS1Q9Y697 457 aa10.93□□□□□ -0.66
COL17A1-203ENST00000393211 GREB1LQ9C091 1923 aaPredicted RBP10.92□□□□□ -0.66
COL17A1-203ENST00000393211 ESYT3A0FGR9 886 aa10.92□□□□□ -0.66
COL17A1-203ENST00000393211 ZSCAN5CA6NGD5 496 aaPredicted RBP10.92□□□□□ -0.66
COL17A1-203ENST00000393211 E9PMD0 336 aa10.92□□□□□ -0.66
COL17A1-203ENST00000393211 GNPATO15228 680 aa10.92□□□□□ -0.66
COL17A1-203ENST00000393211 SSBP05455 408 aaKnown RBP eCLIP10.92□□□□□ -0.66
COL17A1-203ENST00000393211 KRT18P05783 430 aaKnown RBP10.92□□□□□ -0.66
COL17A1-203ENST00000393211 PAEPP09466 180 aa10.92□□□□□ -0.66
COL17A1-203ENST00000393211 H2AFZP0C0S5 128 aa10.92□□□□□ -0.66
COL17A1-203ENST00000393211 FERP16591 822 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms