RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 CYP3A7P24462 503 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 OAS2P29728 719 aaKnown RBP10.61□□□□□ -0.71
COL6A3-204ENST00000392003 HNRNPH3P31942 346 aaKnown RBP10.61□□□□□ -0.71
COL6A3-204ENST00000392003 ZYXQ15942 572 aaKnown RBP10.61□□□□□ -0.71
COL6A3-204ENST00000392003 DALRD3Q5D0E6 543 aaKnown RBP10.61□□□□□ -0.71
COL6A3-204ENST00000392003 PAPD7Q5XG87 772 aaKnown RBP10.61□□□□□ -0.71
COL6A3-204ENST00000392003 RINLQ6ZS11 566 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 LRRC55Q6ZSA7 311 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 LACRTQ9GZZ8 138 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 ARHGEF10LQ9HCE6 1279 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 EMILIN3Q9NT22 766 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 TFR2Q9UP52 801 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 PCDHA13Q9Y5I0 950 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 QSER1Q2KHR3 1735 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 NDUFB10O96000 172 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 NAP1L1P55209 391 aaKnown RBP10.61□□□□□ -0.71
COL6A3-204ENST00000392003 EHHADHQ08426 723 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 HSP90B2PQ58FF3 399 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 GMCL1P1Q8NEA9 526 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 GMCL1Q96IK5 515 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 FAM20AQ96MK3 541 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 FUT8Q9BYC5 575 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 KCNMB3Q9NPA1 279 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 HDAC6Q9UBN7 1215 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 BCS1LQ9Y276 419 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 LRRC53A6NM62 1247 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 YDJCA8MPS7 323 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 STAT3P40763 770 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 SNAP25P60880 206 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 SLC9C1Q4G0N8 1177 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 MFSD4BQ5TF39 518 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 TATDN1Q6P1N9 297 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 PPP4R3CPQ6ZMV5 832 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 MIGA2Q7L4E1 593 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 SMCR8Q8TEV9 937 aaPredicted RBP10.61□□□□□ -0.71
COL6A3-204ENST00000392003 C7orf43Q8WVR3 580 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 FAM184BQ9ULE4 1060 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 ZNRF3Q9ULT6 936 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 ANKRD31Q8N7Z5 1873 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 PITPNM2Q9BZ72 1349 aa10.61□□□□□ -0.71
COL6A3-204ENST00000392003 SASH3O75995 380 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 CYP11B2P19099 503 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 CACNB1Q02641 598 aaPredicted RBP10.6□□□□□ -0.71
COL6A3-204ENST00000392003 SFMBT2Q5VUG0 894 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 PDXDC1Q6P996 788 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 ARHGAP27Q6ZUM4 889 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 KRT26Q7Z3Y9 468 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 ANKRD23Q86SG2 305 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 PNKPQ96T60 521 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 NLRC4Q9NPP4 1024 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 RRP15Q9Y3B9 282 aaKnown RBP10.6□□□□□ -0.71
COL6A3-204ENST00000392003 POTEFA5A3E0 1075 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 TFRCP02786 760 aaKnown RBP10.6□□□□□ -0.71
COL6A3-204ENST00000392003 POTEIP0CG38 1075 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 ADAM9Q13443 819 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 SHROOM1Q2M3G4 852 aaPredicted RBP10.6□□□□□ -0.71
COL6A3-204ENST00000392003 CCDC181Q5TID7 509 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 POTEGQ6S5H5 508 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 POTEEQ6S8J3 1075 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 NOA1Q8NC60 698 aaKnown RBP10.6□□□□□ -0.71
COL6A3-204ENST00000392003 GLIS3Q8NEA6 775 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 LSM14BQ9BX40 385 aaKnown RBP10.6□□□□□ -0.71
COL6A3-204ENST00000392003 ABCB6Q9NP58 842 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 CEP72Q9P209 647 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 ARHGAP20Q9P2F6 1191 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 GJA3Q9Y6H8 435 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 MEIS2O14770 477 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 TBCAO75347 108 aaKnown RBP10.6□□□□□ -0.71
COL6A3-204ENST00000392003 MED24O75448 989 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 PABPC4Q13310 644 aaKnown RBP eCLIP10.6□□□□□ -0.71
COL6A3-204ENST00000392003 SRLQ86TD4 932 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 ATL2Q8NHH9 583 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 MBOAT7Q96N66 472 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 EHMT1Q9H9B1 1298 aa10.6□□□□□ -0.71
COL6A3-204ENST00000392003 ZNF70Q9UC06 446 aaPredicted RBP10.6□□□□□ -0.71
COL6A3-204ENST00000392003 MYH7BA7E2Y1 1941 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 NPHP3-ACAD11A0A0J9YXS1 232 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 SPDYE2BA6NHP3 402 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 SRGAP2O75044 1071 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 PLEKP08567 350 aaPredicted RBP10.59□□□□□ -0.71
COL6A3-204ENST00000392003 SPDYE6P0CI01 402 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 VSNL1P62760 191 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 BEND6Q5SZJ8 279 aaPredicted RBP10.59□□□□□ -0.71
COL6A3-204ENST00000392003 CIAPIN1Q6FI81 312 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 SH3BP5LQ7L8J4 393 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 TAOK3Q9H2K8 898 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 KDM4CQ9H3R0 1056 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 CTDP1Q9Y5B0 961 aaPredicted RBP10.59□□□□□ -0.71
COL6A3-204ENST00000392003 RCCD1A6NED2 376 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 CALUO43852 315 aaPredicted RBP10.59□□□□□ -0.71
COL6A3-204ENST00000392003 RPA1P27694 616 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 USP14P54578 494 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 POLR2FP61218 127 aaKnown RBP10.59□□□□□ -0.71
COL6A3-204ENST00000392003 Q4G0T1 1027 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 ZCWPW2Q504Y3 356 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 CCDC97Q96F63 343 aaPredicted RBP10.59□□□□□ -0.71
COL6A3-204ENST00000392003 SSU72P8A0A1W2PR75 194 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 MEIS1O00470 390 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 EPHB6O15197 1021 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 SERPING1P05155 500 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms