RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 DHX15O43143 795 aaKnown RBP10.29□□□□□ -0.76
USP4-202ENST00000351842 FARP2O94887 1054 aaPredicted RBP10.29□□□□□ -0.76
USP4-202ENST00000351842 LONP1P36776 959 aaKnown RBP10.29□□□□□ -0.76
USP4-202ENST00000351842 ATN1P54259 1190 aaPredicted RBP10.29□□□□□ -0.76
USP4-202ENST00000351842 ATL3Q6DD88 541 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 TAPT1Q6NXT6 567 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 SLC5A5Q92911 643 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 GPRASP2Q96D09 838 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 GPRC5CQ9NQ84 441 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 USP20Q9Y2K6 914 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 CSDE1O75534 798 aaKnown RBP10.29□□□□□ -0.76
USP4-202ENST00000351842 CUL4BQ13620 913 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 ARL6IP4Q66PJ3 421 aaKnown RBP10.29□□□□□ -0.76
USP4-202ENST00000351842 MCTP2Q6DN12 878 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 GPBP1Q86WP2 473 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 IQUBQ8NA54 791 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 AP5M1Q9H0R1 490 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 ZCCHC17Q9NP64 241 aaKnown RBP10.29□□□□□ -0.76
USP4-202ENST00000351842 PCDHA10Q9Y5I2 948 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 SLITRK3O94933 977 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 MBD3O95983 291 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 GJB1P08034 283 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 GRB10Q13322 594 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 SNW1Q13573 536 aaKnown RBP10.29□□□□□ -0.76
USP4-202ENST00000351842 NEDD9Q14511 834 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 HAUS3Q68CZ6 603 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 LRRC71Q8N4P6 559 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 CDHR1Q96JP9 859 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 CEP170P1Q96L14 293 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 FAM49AQ9H0Q0 323 aaPredicted RBP10.29□□□□□ -0.76
USP4-202ENST00000351842 TBC1D22BQ9NU19 505 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 MAP3K20Q9NYL2 800 aaKnown RBP10.29□□□□□ -0.76
USP4-202ENST00000351842 DNM3Q9UQ16 869 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 PLXNB2O15031 1838 aa10.29□□□□□ -0.76
USP4-202ENST00000351842 CYP3A7-CYP3A51PA0A087WV96 503 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 RSPH10B2B2RC85 870 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 ELP1O95163 1332 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 RSPH10BP0C881 870 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 CYP3A7P24462 503 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 STAT5BP51692 787 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 PRKCEQ02156 737 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 SPIRE1Q08AE8 756 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 LRRC41Q15345 812 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 FMR1NBQ8N0W7 255 aaPredicted RBP10.28□□□□□ -0.76
USP4-202ENST00000351842 IGSF22Q8N9C0 903 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 SCLT1Q96NL6 688 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 PNMA5Q96PV4 448 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 NAP1L4Q99733 375 aaKnown RBP10.28□□□□□ -0.76
USP4-202ENST00000351842 ZNF302Q9NR11 478 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 ARHGEF35A5YM69 484 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 RARBP10826 455 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 ABRAQ8N0Z2 381 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 UNC93B1Q9H1C4 597 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 XPNPEP3Q9NQH7 507 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 LAD1O00515 517 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 ZNF862O60290 1169 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 GH1P01241 217 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 SPATA31C1P0DKV0 1188 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 EDNRBP24530 442 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 QARSP47897 775 aaKnown RBP10.28□□□□□ -0.76
USP4-202ENST00000351842 STX17P56962 302 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 KLHL40Q2TBA0 621 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 ZSCAN23Q3MJ62 389 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 CELF3Q5SZQ8 465 aaKnown RBP10.28□□□□□ -0.76
USP4-202ENST00000351842 FAM102BQ5T8I3 360 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 METTL7BQ6UX53 244 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 KRBA2Q6ZNG9 492 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 LARP4BQ92615 738 aaKnown RBP10.28□□□□□ -0.76
USP4-202ENST00000351842 KIFC3Q9BVG8 833 aa10.28□□□□□ -0.76
USP4-202ENST00000351842 PDE4DIPQ5VU43 2346 aa10.27□□□□□ -0.76
USP4-202ENST00000351842 PLA2G4BP0C869 781 aa10.27□□□□□ -0.77
USP4-202ENST00000351842 YWHABP31946 246 aaKnown RBP10.27□□□□□ -0.77
USP4-202ENST00000351842 FXR2P51116 673 aaKnown RBP eCLIP10.27□□□□□ -0.77
USP4-202ENST00000351842 KRT76Q01546 638 aa10.27□□□□□ -0.77
USP4-202ENST00000351842 MIS18BP1Q6P0N0 1132 aa10.27□□□□□ -0.77
USP4-202ENST00000351842 KSR1Q8IVT5 923 aa10.27□□□□□ -0.77
USP4-202ENST00000351842 TMEM143Q96AN5 459 aa10.27□□□□□ -0.77
USP4-202ENST00000351842 RNPEPQ9H4A4 650 aa10.27□□□□□ -0.77
USP4-202ENST00000351842 FAM184BQ9ULE4 1060 aa10.27□□□□□ -0.77
USP4-202ENST00000351842 PCDHA5Q9Y5H7 936 aa10.27□□□□□ -0.77
USP4-202ENST00000351842 PSAPP07602 524 aa10.27□□□□□ -0.77
USP4-202ENST00000351842 PTMSP20962 102 aa10.27□□□□□ -0.77
USP4-202ENST00000351842 NAALADL2Q58DX5 795 aa10.27□□□□□ -0.77
USP4-202ENST00000351842 SV2BQ7L1I2 683 aa10.27□□□□□ -0.77
USP4-202ENST00000351842 SEPT1Q8WYJ6 367 aa10.27□□□□□ -0.77
USP4-202ENST00000351842 RIT2Q99578 217 aa10.27□□□□□ -0.77
USP4-202ENST00000351842 RUSC1Q9BVN2 902 aa10.27□□□□□ -0.77
USP4-202ENST00000351842 VTA1Q9NP79 307 aa10.27□□□□□ -0.77
USP4-202ENST00000351842 GSTTP1A0A1W2PQM5 241 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 HMGCRP04035 888 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 ZNF865P0CJ78 1059 aaPredicted RBP10.26□□□□□ -0.77
USP4-202ENST00000351842 AKR1A1P14550 325 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 PRPHP41219 470 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 ZNF200P98182 395 aaPredicted RBP10.26□□□□□ -0.77
USP4-202ENST00000351842 ARHGAP1Q07960 439 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 POSTNQ15063 836 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 SASS6Q6UVJ0 657 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 REM2Q8IYK8 340 aaPredicted RBP10.26□□□□□ -0.77
USP4-202ENST00000351842 SYAP1Q96A49 352 aaPredicted RBP10.26□□□□□ -0.77
USP4-202ENST00000351842 PAGE5Q96GU1 130 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms