RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 MRPL4Q9BYD3 311 aaKnown RBP11.1□□□□□ -0.63
USP54-201ENST00000339859 ATP2A1O14983 1001 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 MED7O43513 233 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 POLR2BP30876 1174 aaKnown RBP11.1□□□□□ -0.63
USP54-201ENST00000339859 BEST2Q8NFU1 509 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 PIGOQ8TEQ8 1089 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 P2RX5Q93086 422 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 NAP1L3Q99457 506 aaPredicted RBP11.1□□□□□ -0.63
USP54-201ENST00000339859 MAD2L2Q9UI95 211 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 IKBKGQ9Y6K9 419 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 GAKO14976 1311 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 TYW5A2RUC4 315 aaKnown RBP11.1□□□□□ -0.63
USP54-201ENST00000339859 ACER1Q8TDN7 264 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 PPP2R3CQ969Q6 453 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 PGBD4Q96DM1 585 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 GLT1D1Q96MS3 346 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 ST7Q9NRC1 585 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 PCDHB4Q9Y5E5 795 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 SETD1AO15047 1707 aaKnown RBP11.1□□□□□ -0.63
USP54-201ENST00000339859 RPLP2P05387 115 aaKnown RBP11.1□□□□□ -0.63
USP54-201ENST00000339859 HOXC6P09630 235 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 RFC5P40937 340 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 ARPP19P56211 112 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 HERVK_113P62684 666 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 MXRA8Q9BRK3 442 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 COL16A1Q07092 1604 aaPredicted RBP11.1□□□□□ -0.63
USP54-201ENST00000339859 POTEB3A0JP26 581 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 STRNO43815 780 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 AFPP02771 609 aaKnown RBP11.1□□□□□ -0.63
USP54-201ENST00000339859 IFRD2Q12894 506 aaPredicted RBP11.1□□□□□ -0.63
USP54-201ENST00000339859 BFSP1Q12934 665 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 VGLL4Q14135 290 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 HLTFQ14527 1009 aaKnown RBP eCLIP11.1□□□□□ -0.63
USP54-201ENST00000339859 XKR3Q5GH77 459 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 POTEBQ6S5H4 581 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 TAX1BP1Q86VP1 789 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 VGLL2Q8N8G2 317 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 CTTNBP2NLQ9P2B4 639 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 LRP6O75581 1613 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 LTBP4Q8N2S1 1624 aa11.1□□□□□ -0.63
USP54-201ENST00000339859 CTAGE9A4FU28 777 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 STXBP3O00186 592 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 TBC1D12O60347 775 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 FAM193AP78312 1265 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 ZNF568Q3ZCX4 644 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 SPATA1Q5VX52 437 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 CCDC186Q7Z3E2 898 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 RDM1Q8NG50 284 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 PCIF1Q9H4Z3 704 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 CBX8Q9HC52 389 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 PITPNM2Q9BZ72 1349 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 TCRBV5S4A2TA0A5A2 114 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 C17orf102A2RUQ5 167 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 DDIT3P35638 169 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 EFNA5P52803 228 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 OSTNP61366 133 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 CLUL1Q15846 466 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 SYCE1Q8N0S2 351 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 TRPM4Q8TD43 1214 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 SEL1LQ9UBV2 794 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 INPP5FQ9Y2H2 1132 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 POTEMA6NI47 508 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 CLDN3O15551 220 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 EZRP15311 586 aaKnown RBP11.09□□□□□ -0.63
USP54-201ENST00000339859 YWHABP31946 246 aaKnown RBP11.09□□□□□ -0.63
USP54-201ENST00000339859 LMBRD1Q9NUN5 540 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 RCOR1Q9UKL0 485 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 LRRC37A3O60309 1634 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 ZNF541Q9H0D2 1346 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 ALS2Q96Q42 1657 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 PPM1KQ8N3J5 372 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 OXER1Q8TDS5 423 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 ERAP1Q9NZ08 941 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 IMPACTQ9P2X3 320 aa11.09□□□□□ -0.63
USP54-201ENST00000339859 DCDC2CA8MYV0 355 aa11.08□□□□□ -0.63
USP54-201ENST00000339859 FKTNO75072 461 aa11.08□□□□□ -0.63
USP54-201ENST00000339859 PTK2Q05397 1052 aa11.08□□□□□ -0.63
USP54-201ENST00000339859 MXD4Q14582 209 aaPredicted RBP11.08□□□□□ -0.63
USP54-201ENST00000339859 CRACR2AQ9BSW2 395 aa11.08□□□□□ -0.63
USP54-201ENST00000339859 PHF20Q9BVI0 1012 aa11.08□□□□□ -0.63
USP54-201ENST00000339859 CCDC113Q9H0I3 377 aa11.08□□□□□ -0.63
USP54-201ENST00000339859 PLCH1Q4KWH8 1693 aa11.08□□□□□ -0.64
USP54-201ENST00000339859 GNASQ5JWF2 1037 aa11.08□□□□□ -0.64
USP54-201ENST00000339859 ARMCX2Q7L311 632 aa11.08□□□□□ -0.64
USP54-201ENST00000339859 SPATC1LQ9H0A9 340 aa11.08□□□□□ -0.64
USP54-201ENST00000339859 GUCA1BQ9UMX6 200 aa11.08□□□□□ -0.64
USP54-201ENST00000339859 AFDNP55196 1824 aaKnown RBP11.08□□□□□ -0.64
USP54-201ENST00000339859 RIC1Q4ADV7 1423 aa11.08□□□□□ -0.64
USP54-201ENST00000339859 SHMT1P34896 483 aa11.08□□□□□ -0.64
USP54-201ENST00000339859 EXOC3L4Q17RC7 722 aa11.08□□□□□ -0.64
USP54-201ENST00000339859 UNC13DQ70J99 1090 aa11.08□□□□□ -0.64
USP54-201ENST00000339859 ADGRA1Q86SQ6 560 aa11.08□□□□□ -0.64
USP54-201ENST00000339859 PAGE5Q96GU1 130 aa11.08□□□□□ -0.64
USP54-201ENST00000339859 TDP2O95551 362 aa11.08□□□□□ -0.64
USP54-201ENST00000339859 GPC3P51654 580 aa11.08□□□□□ -0.64
USP54-201ENST00000339859 RESP18Q5W5W9 173 aa11.08□□□□□ -0.64
USP54-201ENST00000339859 DNERQ8NFT8 737 aa11.08□□□□□ -0.64
USP54-201ENST00000339859 BBXQ8WY36 941 aaPredicted RBP11.08□□□□□ -0.64
USP54-201ENST00000339859 CCDC51Q96ER9 411 aa11.08□□□□□ -0.64
USP54-201ENST00000339859 CNOT6LQ96LI5 555 aaKnown RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms