RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ATG2AQ2TAZ0 1938 aa16.96■□□□□ 0.31
CCDC88B-201ENST00000301897 M0QZ92 97 aa16.96■□□□□ 0.31
CCDC88B-201ENST00000301897 GRM6O15303 877 aa16.96■□□□□ 0.31
CCDC88B-201ENST00000301897 MMP1P03956 469 aa16.96■□□□□ 0.31
CCDC88B-201ENST00000301897 LINC00271P0C7V0 271 aa16.96■□□□□ 0.31
CCDC88B-201ENST00000301897 CHMLP26374 656 aa16.96■□□□□ 0.31
CCDC88B-201ENST00000301897 LTBRP36941 435 aa16.96■□□□□ 0.31
CCDC88B-201ENST00000301897 PTH1RQ03431 593 aa16.96■□□□□ 0.31
CCDC88B-201ENST00000301897 HYAL1Q12794 435 aa16.96■□□□□ 0.31
CCDC88B-201ENST00000301897 SMAD4Q13485 552 aaKnown RBP16.96■□□□□ 0.31
CCDC88B-201ENST00000301897 IER5Q5VY09 327 aa16.96■□□□□ 0.31
CCDC88B-201ENST00000301897 EXOC6Q8TAG9 804 aa16.96■□□□□ 0.31
CCDC88B-201ENST00000301897 DGKIO75912 1065 aa16.95■□□□□ 0.3
CCDC88B-201ENST00000301897 STAG3L1P0CL83 205 aa16.95■□□□□ 0.3
CCDC88B-201ENST00000301897 CALM1P0DP23 149 aa16.95■□□□□ 0.3
CCDC88B-201ENST00000301897 CALM2P0DP24 149 aa16.95■□□□□ 0.3
CCDC88B-201ENST00000301897 CALM3P0DP25 149 aa16.95■□□□□ 0.3
CCDC88B-201ENST00000301897 GSPT1P15170 499 aaKnown RBP16.95■□□□□ 0.3
CCDC88B-201ENST00000301897 MRPS6P82932 125 aaKnown RBP16.95■□□□□ 0.3
CCDC88B-201ENST00000301897 MTMR1Q13613 665 aa16.95■□□□□ 0.3
CCDC88B-201ENST00000301897 NPAS4Q8IUM7 802 aa16.95■□□□□ 0.3
CCDC88B-201ENST00000301897 TEX2Q8IWB9 1127 aa16.95■□□□□ 0.3
CCDC88B-201ENST00000301897 MB21D2Q8IYB1 491 aaPredicted RBP16.95■□□□□ 0.3
CCDC88B-201ENST00000301897 CMTR2Q8IYT2 770 aaKnown RBP16.95■□□□□ 0.3
CCDC88B-201ENST00000301897 DNAJB3Q8WWF6 145 aa16.95■□□□□ 0.3
CCDC88B-201ENST00000301897 MFSD14AQ96MC6 490 aa16.95■□□□□ 0.3
CCDC88B-201ENST00000301897 LY9Q9HBG7 655 aa16.95■□□□□ 0.3
CCDC88B-201ENST00000301897 CDY2AQ9Y6F7 541 aa16.95■□□□□ 0.3
CCDC88B-201ENST00000301897 GSTTP1A0A1W2PQM5 241 aa16.94■□□□□ 0.3
CCDC88B-201ENST00000301897 SPDYE3A6NKU9 549 aa16.94■□□□□ 0.3
CCDC88B-201ENST00000301897 SGSM2O43147 1006 aa16.94■□□□□ 0.3
CCDC88B-201ENST00000301897 MBTPS2O43462 519 aa16.94■□□□□ 0.3
CCDC88B-201ENST00000301897 ATP9AO75110 1047 aa16.94■□□□□ 0.3
CCDC88B-201ENST00000301897 MARK3P27448 753 aa16.94■□□□□ 0.3
CCDC88B-201ENST00000301897 IRS1P35568 1242 aa16.94■□□□□ 0.3
CCDC88B-201ENST00000301897 ANTXR2P58335 489 aa16.94■□□□□ 0.3
CCDC88B-201ENST00000301897 HERC4Q5GLZ8 1057 aaPredicted RBP16.94■□□□□ 0.3
CCDC88B-201ENST00000301897 ALYREFQ86V81 257 aaKnown RBP16.94■□□□□ 0.3
CCDC88B-201ENST00000301897 AZI2Q9H6S1 392 aa16.94■□□□□ 0.3
CCDC88B-201ENST00000301897 RNF216Q9NWF9 866 aaPredicted RBP16.94■□□□□ 0.3
CCDC88B-201ENST00000301897 CD207Q9UJ71 328 aa16.94■□□□□ 0.3
CCDC88B-201ENST00000301897 PLAGL2Q9UPG8 496 aa16.94■□□□□ 0.3
CCDC88B-201ENST00000301897 TELO2Q9Y4R8 837 aa16.94■□□□□ 0.3
CCDC88B-201ENST00000301897 SUPT16HQ9Y5B9 1047 aaKnown RBP16.94■□□□□ 0.3
CCDC88B-201ENST00000301897 UBIAD1Q9Y5Z9 338 aa16.94■□□□□ 0.3
CCDC88B-201ENST00000301897 WDFY4Q6ZS81 3184 aa16.94■□□□□ 0.3
CCDC88B-201ENST00000301897 CCDC69A6NI79 296 aa16.93■□□□□ 0.3
CCDC88B-201ENST00000301897 ITGB5P18084 799 aa16.93■□□□□ 0.3
CCDC88B-201ENST00000301897 ADAM15Q13444 863 aa16.93■□□□□ 0.3
CCDC88B-201ENST00000301897 MARCH8Q5T0T0 291 aa16.93■□□□□ 0.3
CCDC88B-201ENST00000301897 NFXL1Q6ZNB6 911 aa16.93■□□□□ 0.3
CCDC88B-201ENST00000301897 MAP4K1Q92918 833 aa16.93■□□□□ 0.3
CCDC88B-201ENST00000301897 TMEM87BQ96K49 555 aa16.93■□□□□ 0.3
CCDC88B-201ENST00000301897 JPH1Q9HDC5 661 aaPredicted RBP16.93■□□□□ 0.3
CCDC88B-201ENST00000301897 FSD2A1L4K1 749 aa16.92■□□□□ 0.3
CCDC88B-201ENST00000301897 RBAK-RBAKDNI3L0D1 243 aa16.92■□□□□ 0.3
CCDC88B-201ENST00000301897 STXBP3O00186 592 aa16.92■□□□□ 0.3
CCDC88B-201ENST00000301897 EYA4O95677 639 aa16.92■□□□□ 0.3
CCDC88B-201ENST00000301897 CD52P31358 61 aa16.92■□□□□ 0.3
CCDC88B-201ENST00000301897 MCM5P33992 734 aa16.92■□□□□ 0.3
CCDC88B-201ENST00000301897 NDUFV1P49821 464 aa16.92■□□□□ 0.3
CCDC88B-201ENST00000301897 CLUL1Q15846 466 aa16.92■□□□□ 0.3
CCDC88B-201ENST00000301897 MYL10Q9BUA6 226 aa16.92■□□□□ 0.3
CCDC88B-201ENST00000301897 IGFLR1Q9H665 355 aa16.92■□□□□ 0.3
CCDC88B-201ENST00000301897 JADE2Q9NQC1 790 aa16.92■□□□□ 0.3
CCDC88B-201ENST00000301897 SLC9A2Q9UBY0 812 aa16.92■□□□□ 0.3
CCDC88B-201ENST00000301897 TRPV2Q9Y5S1 764 aa16.92■□□□□ 0.3
CCDC88B-201ENST00000301897 TAF6LQ9Y6J9 622 aa16.92■□□□□ 0.3
CCDC88B-201ENST00000301897 ZDBF2Q9HCK1 2354 aa16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 PRC1O43663 620 aa16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 TBX10O75333 385 aa16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 INSRRP14616 1297 aa16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 PDE4AP27815 886 aa16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 MRE11P49959 708 aa16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 IGBP1P78318 339 aa16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 NHLH1Q02575 133 aa16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 DLX2Q07687 328 aaPredicted RBP16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 PAK2Q13177 524 aa16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 PKN1Q16512 942 aa16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 NME8Q8N427 588 aa16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 SRBD1Q8N5C6 995 aaKnown RBP16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 EFHBQ8N7U6 833 aa16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 SDF4Q9BRK5 362 aa16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 FAM49AQ9H0Q0 323 aaPredicted RBP16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 AGO3Q9H9G7 860 aaKnown RBP16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 ALG13Q9NP73 1137 aaKnown RBP16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 TRPC6Q9Y210 931 aa16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 PCDHA2Q9Y5H9 948 aa16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 RBM8AQ9Y5S9 174 aaKnown RBP16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 MRPL42Q9Y6G3 142 aaKnown RBP16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 IGSF9BQ9UPX0 1349 aa16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 KDM3AQ9Y4C1 1321 aa16.91■□□□□ 0.3
CCDC88B-201ENST00000301897 TECTAO75443 2155 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 PLEKHA8P1O95397 391 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 ITGB1P05556 798 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 SCG2P13521 617 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 LIFRP42702 1097 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 SLC26A2P50443 739 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 ODR4Q5SWX8 454 aa16.9■□□□□ 0.3
CCDC88B-201ENST00000301897 HFE2Q6ZVN8 426 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 112 ms