RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 TEDDM1Q5T9Z0 273 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 CMTR1Q8N1G2 835 aaKnown RBP12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 AGGF1Q8N302 714 aaeCLIP12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 PPP1R36Q96LQ0 422 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 PARVGQ9HBI0 331 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 NSD2O96028 1365 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 LRRN2O75325 713 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 TMOD1P28289 359 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 NUDT16Q96DE0 195 aaKnown RBP12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 TMEM87BQ96K49 555 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 ADCY7P51828 1080 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 DMC1Q14565 340 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 CCDC149Q6ZUS6 474 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 PANK4Q9NVE7 773 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 MYH8P13535 1937 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 JPH4Q96JJ6 628 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 BEGAINQ9BUH8 593 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 PRDM11Q9NQV5 511 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 IPPQ9Y573 584 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 CROCCQ5TZA2 2017 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 ARFIP2P53365 341 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 ZNF710Q8N1W2 664 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 CCDC87Q9NVE4 849 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 ORC4O43929 436 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 LMBR1LQ6UX01 489 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 TRIM33Q9UPN9 1127 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 SPATA21Q7Z572 469 aa12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 SAMSN1Q9NSI8 373 aaKnown RBP12.6□□□□□ -0.39
SHROOM3-201ENST00000296043 CYB5D1Q6P9G0 228 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 TPH2Q8IWU9 490 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 MRPS26Q9BYN8 205 aaKnown RBP12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 POLE3Q9NRF9 147 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 DSEQ9UL01 958 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 PCDHA5Q9Y5H7 936 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 CCT8L1PA6NM43 557 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 ATXN3P54252 364 aaPredicted RBP12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 PYGLP06737 847 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 GOLGA8HP0CJ92 632 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 CHN1P15882 459 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 NR1H3Q13133 447 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 C19orf44Q9H6X5 657 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 PRDM1O75626 825 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 USP14P54578 494 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 PPM1KQ8N3J5 372 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 FBXL5Q9UKA1 691 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 EFTUD2Q15029 972 aaKnown RBP eCLIP12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 PLEKHM3Q6ZWE6 761 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 SMAD1Q15797 465 aaKnown RBP12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 KRT24Q2M2I5 525 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 AP3B1O00203 1094 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 ASNA1O43681 348 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 MDH1P40925 334 aaKnown RBP12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 ANO4Q32M45 955 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 GTSE1Q9NYZ3 720 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 A0A1W2PQ27 194 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 A0A1W2PQ64 194 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 A0A1W2PQD8 194 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 IKBKBO14920 756 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 DLATP10515 647 aaKnown RBP12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 RCN1Q15293 331 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 RNF14Q9UBS8 474 aa12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 IPO11Q9UI26 975 aaKnown RBP12.59□□□□□ -0.39
SHROOM3-201ENST00000296043 GOLGA8JA6NMD2 632 aa12.58□□□□□ -0.39
SHROOM3-201ENST00000296043 ANP32DO95626 131 aa12.58□□□□□ -0.39
SHROOM3-201ENST00000296043 DARS2Q6PI48 645 aaKnown RBP12.58□□□□□ -0.39
SHROOM3-201ENST00000296043 TRPC6Q9Y210 931 aa12.58□□□□□ -0.39
SHROOM3-201ENST00000296043 MYH11P35749 1972 aa12.58□□□□□ -0.39
SHROOM3-201ENST00000296043 KLHL31Q9H511 634 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 SPDYE2BA6NHP3 402 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 SPDYE6P0CI01 402 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 TECP42680 631 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 APOA5Q6Q788 366 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 SSH2Q76I76 1423 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 GPR141Q7Z602 305 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 SIX6OS1Q8N1H7 587 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 KLC3Q6P597 504 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 KRT25Q7Z3Z0 450 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 ARMT1Q9H993 441 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 PTH1RQ03431 593 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 ZSCAN9O15535 394 aaPredicted RBP12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 GPAA1O43292 621 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 STX3Q13277 289 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 COG1Q8WTW3 980 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 BBS2Q9BXC9 721 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 SYTL2Q9HCH5 934 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 PMS2P54278 862 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 CENPUQ71F23 418 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 PACS2Q86VP3 889 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 ANKLE2Q86XL3 938 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 MTRQ99707 1265 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 ZMYM6O95789 1325 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 ATXN8OSP0DMR3 200 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 FGFR4P22455 802 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 EIF6P56537 245 aaKnown RBP12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 REXO1Q8N1G1 1221 aaKnown RBP12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 LZICQ8WZA0 190 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 IL10P22301 178 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 PPP4R4Q6NUP7 873 aa12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.58□□□□□ -0.4
SHROOM3-201ENST00000296043 ERP27Q96DN0 273 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms