RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 AKAP3O75969 853 aa18.29■□□□□ 0.52
VPS54-201ENST00000272322 EHD4Q9H223 541 aa18.29■□□□□ 0.52
VPS54-201ENST00000272322 SPATA31C1P0DKV0 1188 aa18.29■□□□□ 0.52
VPS54-201ENST00000272322 ABCB4P21439 1286 aa18.29■□□□□ 0.52
VPS54-201ENST00000272322 PAFAH1B1P43034 410 aa18.29■□□□□ 0.52
VPS54-201ENST00000272322 DACT2Q5SW24 774 aa18.29■□□□□ 0.52
VPS54-201ENST00000272322 NAA35Q5VZE5 725 aa18.29■□□□□ 0.52
VPS54-201ENST00000272322 HGSNATQ68CP4 663 aa18.29■□□□□ 0.52
VPS54-201ENST00000272322 CCDC17Q96LX7 622 aa18.29■□□□□ 0.52
VPS54-201ENST00000272322 NOX5Q96PH1 765 aa18.29■□□□□ 0.52
VPS54-201ENST00000272322 PRR12Q9ULL5 1215 aa18.29■□□□□ 0.52
VPS54-201ENST00000272322 CKAP4Q07065 602 aaKnown RBP18.28■□□□□ 0.52
VPS54-201ENST00000272322 GIT2Q14161 759 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 PODNQ7Z5L7 613 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 DYDC2Q96IM9 177 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 TLR10Q9BXR5 811 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 ATF5Q9Y2D1 282 aaPredicted RBP18.28■□□□□ 0.52
VPS54-201ENST00000272322 TMEM150BA6NC51 233 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 TRIM49P0CI25 452 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 TRIM49CP0CI26 452 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 PTK2Q05397 1052 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 GBP3Q9H0R5 595 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 PCIF1Q9H4Z3 704 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 SAMM50Q9Y512 469 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 ARHGAP44Q17R89 818 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 SLC27A3Q5K4L6 730 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 GOLGA6L1Q8N7Z2 621 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 BANK1Q8NDB2 785 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 NAV1Q8NEY1 1877 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 ZDHHC15Q96MV8 337 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 KRT12Q99456 494 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 EIF2AK1Q9BQI3 630 aaKnown RBP18.28■□□□□ 0.52
VPS54-201ENST00000272322 AP1M1Q9BXS5 423 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 TMEM39BQ9GZU3 492 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 RSPH14Q9UHP6 348 aa18.28■□□□□ 0.52
VPS54-201ENST00000272322 LAMB1P07942 1786 aa18.27■□□□□ 0.52
VPS54-201ENST00000272322 TISP43B9A030 160 aa18.27■□□□□ 0.52
VPS54-201ENST00000272322 LRRN2O75325 713 aa18.27■□□□□ 0.52
VPS54-201ENST00000272322 RREB1Q92766 1687 aa18.27■□□□□ 0.52
VPS54-201ENST00000272322 GFPT2O94808 682 aa18.27■□□□□ 0.52
VPS54-201ENST00000272322 SLC12A3P55017 1021 aa18.27■□□□□ 0.52
VPS54-201ENST00000272322 ASIC2Q16515 512 aa18.27■□□□□ 0.52
VPS54-201ENST00000272322 CCDC70Q6NSX1 233 aa18.27■□□□□ 0.52
VPS54-201ENST00000272322 AJAP1Q9UKB5 411 aaPredicted RBP18.27■□□□□ 0.52
VPS54-201ENST00000272322 RABGAP1Q9Y3P9 1069 aa18.27■□□□□ 0.52
VPS54-201ENST00000272322 KCNK3O14649 394 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 ATP8B1O43520 1251 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 XRCC5P13010 732 aaKnown RBP18.26■□□□□ 0.51
VPS54-201ENST00000272322 USP8P40818 1118 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 NOVP48745 357 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 SP4Q02446 784 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 GUCY2DQ02846 1103 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 HAUS3Q68CZ6 603 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 LRRC27Q9C0I9 530 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 KCNMB3Q9NPA1 279 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 ZNF277Q9NRM2 450 aaPredicted RBP18.26■□□□□ 0.51
VPS54-201ENST00000272322 hCG_1984214I3L0E3 225 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 FAM13AO94988 1023 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 PRPF4BQ13523 1007 aaKnown RBP18.26■□□□□ 0.51
VPS54-201ENST00000272322 ZCWPW2Q504Y3 356 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 KLHDC7AQ5VTJ3 777 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 C8orf74Q6P047 294 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 TRIM59Q8IWR1 403 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 ZNF713Q8N859 430 aaPredicted RBP18.26■□□□□ 0.51
VPS54-201ENST00000272322 UBXN6Q9BZV1 441 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 NFU1Q9UMS0 254 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 GCFC2P16383 781 aaKnown RBP18.26■□□□□ 0.51
VPS54-201ENST00000272322 HOXD13P35453 343 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 PPP1R2P41236 205 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 MKRN4PQ13434 485 aaPredicted RBP18.26■□□□□ 0.51
VPS54-201ENST00000272322 EXOC3L4Q17RC7 722 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 CCNI2Q6ZMN8 369 aaPredicted RBP18.26■□□□□ 0.51
VPS54-201ENST00000272322 TMEM179Q6ZVK1 233 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 ERMNQ8TAM6 284 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 KCTD10Q9H3F6 313 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 LCMT1Q9UIC8 334 aa18.26■□□□□ 0.51
VPS54-201ENST00000272322 OPLAHO14841 1288 aa18.25■□□□□ 0.51
VPS54-201ENST00000272322 TUBB2AQ13885 445 aa18.25■□□□□ 0.51
VPS54-201ENST00000272322 LRCH2Q5VUJ6 765 aa18.25■□□□□ 0.51
VPS54-201ENST00000272322 HNRNPLLQ8WVV9 542 aaKnown RBP18.25■□□□□ 0.51
VPS54-201ENST00000272322 TUBB2BQ9BVA1 445 aa18.25■□□□□ 0.51
VPS54-201ENST00000272322 EPB41L5Q9HCM4 733 aa18.25■□□□□ 0.51
VPS54-201ENST00000272322 KDM3AQ9Y4C1 1321 aa18.25■□□□□ 0.51
VPS54-201ENST00000272322 PSMD2Q13200 908 aa18.25■□□□□ 0.51
VPS54-201ENST00000272322 TAF3Q5VWG9 929 aa18.25■□□□□ 0.51
VPS54-201ENST00000272322 LEKR1Q6ZMV7 388 aa18.25■□□□□ 0.51
VPS54-201ENST00000272322 TSGA10Q9BZW7 698 aa18.25■□□□□ 0.51
VPS54-201ENST00000272322 TRIM31Q9BZY9 425 aa18.25■□□□□ 0.51
VPS54-201ENST00000272322 HPCAL4Q9UM19 191 aa18.25■□□□□ 0.51
VPS54-201ENST00000272322 A0A1W2PQJ5 194 aa18.25■□□□□ 0.51
VPS54-201ENST00000272322 CARSP49589 748 aaKnown RBP18.25■□□□□ 0.51
VPS54-201ENST00000272322 HLTFQ14527 1009 aaKnown RBP eCLIP18.25■□□□□ 0.514e-7■■■□□ 16.4
VPS54-201ENST00000272322 KNOP1Q1ED39 458 aaKnown RBP18.25■□□□□ 0.51
VPS54-201ENST00000272322 C10orf67Q8IYJ2 551 aa18.25■□□□□ 0.51
VPS54-201ENST00000272322 ETNPPLQ8TBG4 499 aa18.25■□□□□ 0.51
VPS54-201ENST00000272322 LENG9Q96B70 501 aa18.25■□□□□ 0.51
VPS54-201ENST00000272322 PCDHA2Q9Y5H9 948 aa18.25■□□□□ 0.51
VPS54-201ENST00000272322 TRIM66O15016 1216 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 ARP10275 920 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 ATP1A2P50993 1020 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms