RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 ABCA8O94911 1581 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 A0A1W2PP64 1363 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 MYO1FO00160 1098 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 MEIS1O00470 390 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 APOEP02649 317 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 PCCAP05165 728 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-217ENST00000637988 TAC1P20366 129 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 ABCB4P21439 1286 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 PSMA3P25788 255 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 RFC1P35251 1148 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-217ENST00000637988 ALDH1A3P47895 512 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 CYP4A11Q02928 519 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 YWHAHQ04917 246 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-217ENST00000637988 GLE1Q53GS7 698 aaKnown RBP6.61□□□□□ -1.35
SCN1A-217ENST00000637988 TMEM179Q6ZVK1 233 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 TRERF1Q96PN7 1200 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 DSCC1Q9BVC3 393 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 ECT2Q9H8V3 914 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 RPRD1BQ9NQG5 326 aaKnown RBP6.61□□□□□ -1.35
SCN1A-217ENST00000637988 NXF1Q9UBU9 619 aaKnown RBP6.61□□□□□ -1.35
SCN1A-217ENST00000637988 SH3BP1Q9Y3L3 701 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 NEURL1BA8MQ27 555 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 SCG2P13521 617 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 PHKG2P15735 406 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 MAP4P27816 1152 aaKnown RBP6.61□□□□□ -1.35
SCN1A-217ENST00000637988 RRAGAQ7L523 313 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 SP110Q9HB58 689 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 ZSCAN32Q9NX65 697 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 NFU1Q9UMS0 254 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 RSPH10B2B2RC85 870 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 SLC27A2O14975 620 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 RNASEH1O60930 286 aaKnown RBP6.61□□□□□ -1.35
SCN1A-217ENST00000637988 RSPH10BP0C881 870 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 ACADMP11310 421 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 GRAPQ13588 217 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 LMNTD2Q8IXW0 634 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 GRAPLQ8TC17 118 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-217ENST00000637988 SEPT8Q92599 483 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 VPS39Q96JC1 886 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 SPATA33Q96N06 139 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 ZNF148Q9UQR1 794 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 ECE2O60344 883 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 SKIP12755 728 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 CPT1AP50416 773 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 PAK2Q13177 524 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 MSTO1Q9BUK6 570 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 SPATA16Q9BXB7 569 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 KIAA1024Q9UPX6 916 aa6.61□□□□□ -1.35
SCN1A-217ENST00000637988 LRG1P02750 347 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 FDX1P10109 184 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 AP1B1Q10567 949 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 TMEM132BQ14DG7 1078 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 MAPK6Q16659 721 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 THEMIS2Q5TEJ8 643 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 GSDMAQ96QA5 445 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 USP17L10C9JJH3 530 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 DYRK3O43781 588 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 RHOXF2BP0C7M4 288 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 OSTNP61366 133 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 DNAJC24Q6P3W2 148 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 VSIG1Q86XK7 387 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 IFNL3Q8IZI9 196 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 SDR42E1Q8WUS8 393 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 RHOXF2Q9BQY4 288 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 SUDS3Q9H7L9 328 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-217ENST00000637988 UBN2Q6ZU65 1347 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 HECW2Q9P2P5 1572 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 STAG3L1P0CL83 205 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 NT5C2P49902 561 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 ARRDC4Q8NCT1 418 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 WHAMMQ8TF30 809 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 DCAF4Q8WV16 495 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 ZNF653Q96CK0 615 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 MID2Q9UJV3 735 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 TEX2Q8IWB9 1127 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 GIPC2Q8TF65 315 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 UCMAQ8WVF2 138 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 EIF2AQ9BY44 585 aaKnown RBP6.6□□□□□ -1.35
SCN1A-217ENST00000637988 TRIM15Q9C019 465 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 ATP6V0A4Q9HBG4 840 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 STX18Q9P2W9 335 aaKnown RBP6.6□□□□□ -1.35
SCN1A-217ENST00000637988 KIAA0232Q92628 1395 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 NLRP1Q9C000 1473 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 RALBP11234 206 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 CETPP11597 493 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 GRIK1P39086 918 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 CAPZA2P47755 286 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 ADAM9Q13443 819 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 DARS2Q6PI48 645 aaKnown RBP6.6□□□□□ -1.35
SCN1A-217ENST00000637988 AK8Q96MA6 479 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 MAGED2Q9UNF1 606 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-217ENST00000637988 ARHGAP42A6NI28 874 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 TXNDC9O14530 226 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 SMIM24O75264 130 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 ARIH2O95376 493 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 EN1Q05925 392 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-217ENST00000637988 RSBN1LQ6PCB5 846 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-217ENST00000637988 PDCD7Q8N8D1 485 aaKnown RBP6.6□□□□□ -1.35
SCN1A-217ENST00000637988 PASKQ96RG2 1323 aa6.6□□□□□ -1.35
SCN1A-217ENST00000637988 TMEM2Q9UHN6 1383 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms