RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 LDHDQ86WU2 507 aa21.81■■□□□ 1.08
CLIP3-206ENST00000593074 CCDC170Q8IYT3 715 aa21.81■■□□□ 1.08
CLIP3-206ENST00000593074 UBXN4Q92575 508 aa21.81■■□□□ 1.08
CLIP3-206ENST00000593074 ARID3AQ99856 593 aa21.81■■□□□ 1.08
CLIP3-206ENST00000593074 MEIS1O00470 390 aa21.8■■□□□ 1.08
CLIP3-206ENST00000593074 INPP5BP32019 993 aa21.8■■□□□ 1.08
CLIP3-206ENST00000593074 LPAR1Q92633 364 aa21.8■■□□□ 1.08
CLIP3-206ENST00000593074 EIF2AK1Q9BQI3 630 aaKnown RBP21.8■■□□□ 1.08
CLIP3-206ENST00000593074 KIAA1683Q9H0B3 1180 aa21.8■■□□□ 1.08
CLIP3-206ENST00000593074 EHMT1Q9H9B1 1298 aa21.8■■□□□ 1.08
CLIP3-206ENST00000593074 EMILIN3Q9NT22 766 aa21.8■■□□□ 1.08
CLIP3-206ENST00000593074 EML1O00423 815 aa21.79■■□□□ 1.08
CLIP3-206ENST00000593074 TRAF5O00463 557 aa21.79■■□□□ 1.08
CLIP3-206ENST00000593074 WDR46O15213 610 aaKnown RBP21.79■■□□□ 1.08
CLIP3-206ENST00000593074 GNA14O95837 355 aa21.79■■□□□ 1.08
CLIP3-206ENST00000593074 CYLC1P35663 651 aaPredicted RBP21.79■■□□□ 1.08
CLIP3-206ENST00000593074 HERVK_113P62684 666 aa21.79■■□□□ 1.08
CLIP3-206ENST00000593074 RAD51AP2Q09MP3 1159 aa21.79■■□□□ 1.08
CLIP3-206ENST00000593074 TUBB2AQ13885 445 aa21.79■■□□□ 1.08
CLIP3-206ENST00000593074 PPP4R3CPQ6ZMV5 832 aa21.79■■□□□ 1.08
CLIP3-206ENST00000593074 SLC35F6Q8N357 371 aa21.79■■□□□ 1.08
CLIP3-206ENST00000593074 REEP2Q9BRK0 252 aa21.79■■□□□ 1.08
CLIP3-206ENST00000593074 TUBB2BQ9BVA1 445 aa21.79■■□□□ 1.08
CLIP3-206ENST00000593074 CTAGE9A4FU28 777 aa21.79■■□□□ 1.08
CLIP3-206ENST00000593074 PSMD10O75832 226 aa21.79■■□□□ 1.08
CLIP3-206ENST00000593074 KRT83P78385 493 aa21.79■■□□□ 1.08
CLIP3-206ENST00000593074 PPP2R5CQ13362 524 aa21.79■■□□□ 1.08
CLIP3-206ENST00000593074 EDRF1Q3B7T1 1238 aa21.79■■□□□ 1.08
CLIP3-206ENST00000593074 PRPF38AQ8NAV1 312 aaKnown RBP21.79■■□□□ 1.08
CLIP3-206ENST00000593074 NLGN2Q8NFZ4 835 aa21.79■■□□□ 1.08
CLIP3-206ENST00000593074 SLC5A5Q92911 643 aa21.79■■□□□ 1.08
CLIP3-206ENST00000593074 HAUS4Q9H6D7 363 aa21.79■■□□□ 1.08
CLIP3-206ENST00000593074 NHEJ1Q9H9Q4 299 aaPredicted RBP21.79■■□□□ 1.08
CLIP3-206ENST00000593074 PLAGL2Q9UPG8 496 aa21.79■■□□□ 1.08
CLIP3-206ENST00000593074 EPHB6O15197 1021 aa21.78■■□□□ 1.08
CLIP3-206ENST00000593074 EYA4O95677 639 aa21.78■■□□□ 1.08
CLIP3-206ENST00000593074 NBPF12Q5TAG4 269 aaPredicted RBP21.78■■□□□ 1.08
CLIP3-206ENST00000593074 OTOP1Q7RTM1 612 aa21.78■■□□□ 1.08
CLIP3-206ENST00000593074 NELFCDQ8IXH7 590 aa21.78■■□□□ 1.08
CLIP3-206ENST00000593074 ZNF541Q9H0D2 1346 aa21.78■■□□□ 1.08
CLIP3-206ENST00000593074 EIF3CLB5ME19 914 aaKnown RBP21.78■■□□□ 1.08
CLIP3-206ENST00000593074 CYP4A11Q02928 519 aa21.78■■□□□ 1.08
CLIP3-206ENST00000593074 LRCH2Q5VUJ6 765 aa21.78■■□□□ 1.08
CLIP3-206ENST00000593074 DCAF15Q66K64 600 aa21.78■■□□□ 1.08
CLIP3-206ENST00000593074 EPM2AIP1Q7L775 607 aaPredicted RBP21.78■■□□□ 1.08
CLIP3-206ENST00000593074 EIF3CQ99613 913 aaKnown RBP21.78■■□□□ 1.08
CLIP3-206ENST00000593074 HSD17B14Q9BPX1 270 aa21.78■■□□□ 1.08
CLIP3-206ENST00000593074 TUFT1Q9NNX1 390 aa21.78■■□□□ 1.08
CLIP3-206ENST00000593074 FAM207AQ9NSI2 230 aaPredicted RBP21.78■■□□□ 1.08
CLIP3-206ENST00000593074 ICAM1P05362 532 aa21.77■■□□□ 1.08
CLIP3-206ENST00000593074 CCDC40Q4G0X9 1142 aa21.77■■□□□ 1.08
CLIP3-206ENST00000593074 CEP55Q53EZ4 464 aa21.77■■□□□ 1.08
CLIP3-206ENST00000593074 ARHGAP27Q6ZUM4 889 aa21.77■■□□□ 1.08
CLIP3-206ENST00000593074 RSRC2Q7L4I2 434 aaKnown RBP21.77■■□□□ 1.08
CLIP3-206ENST00000593074 NAPGQ99747 312 aaPredicted RBP21.77■■□□□ 1.08
CLIP3-206ENST00000593074 CDC23Q9UJX2 597 aa21.77■■□□□ 1.08
CLIP3-206ENST00000593074 CCPG1Q9ULG6 757 aa21.77■■□□□ 1.08
CLIP3-206ENST00000593074 RABGAP1Q9Y3P9 1069 aa21.77■■□□□ 1.08
CLIP3-206ENST00000593074 CASP5P51878 434 aa21.76■■□□□ 1.07
CLIP3-206ENST00000593074 SFR1Q86XK3 245 aa21.76■■□□□ 1.07
CLIP3-206ENST00000593074 TRIM59Q8IWR1 403 aa21.76■■□□□ 1.07
CLIP3-206ENST00000593074 EDEM3Q9BZQ6 932 aa21.76■■□□□ 1.07
CLIP3-206ENST00000593074 BHMT2Q9H2M3 363 aa21.76■■□□□ 1.07
CLIP3-206ENST00000593074 HSD17B4P51659 736 aa21.76■■□□□ 1.07
CLIP3-206ENST00000593074 SETQ01105 290 aaPredicted RBP21.76■■□□□ 1.07
CLIP3-206ENST00000593074 HOOK2Q96ED9 719 aa21.76■■□□□ 1.07
CLIP3-206ENST00000593074 AGBL1Q96MI9 1066 aa21.76■■□□□ 1.07
CLIP3-206ENST00000593074 RUSC1Q9BVN2 902 aa21.76■■□□□ 1.07
CLIP3-206ENST00000593074 ZHX3Q9H4I2 956 aa21.76■■□□□ 1.07
CLIP3-206ENST00000593074 MMRN2Q9H8L6 949 aa21.76■■□□□ 1.07
CLIP3-206ENST00000593074 RGL1Q9NZL6 768 aa21.76■■□□□ 1.07
CLIP3-206ENST00000593074 ZNF536O15090 1300 aa21.75■■□□□ 1.07
CLIP3-206ENST00000593074 BAP1Q92560 729 aa21.75■■□□□ 1.07
CLIP3-206ENST00000593074 TRIM10Q9UDY6 481 aa21.75■■□□□ 1.07
CLIP3-206ENST00000593074 DDX41Q9UJV9 622 aaKnown RBP21.75■■□□□ 1.07
CLIP3-206ENST00000593074 TRAF3IP3Q9Y228 551 aa21.75■■□□□ 1.07
CLIP3-206ENST00000593074 MUTP22033 750 aa21.75■■□□□ 1.07
CLIP3-206ENST00000593074 BMT2Q1RMZ1 405 aa21.75■■□□□ 1.07
CLIP3-206ENST00000593074 APOBEC3FQ8IUX4 373 aaKnown RBP21.75■■□□□ 1.07
CLIP3-206ENST00000593074 TANGO6Q9C0B7 1094 aa21.75■■□□□ 1.07
CLIP3-206ENST00000593074 GUCA1BQ9UMX6 200 aa21.75■■□□□ 1.07
CLIP3-206ENST00000593074 GAS7O60861 476 aa21.74■■□□□ 1.07
CLIP3-206ENST00000593074 SLITRK3O94933 977 aa21.74■■□□□ 1.07
CLIP3-206ENST00000593074 IPO7O95373 1038 aaKnown RBP21.74■■□□□ 1.07
CLIP3-206ENST00000593074 ERCC3P19447 782 aa21.74■■□□□ 1.07
CLIP3-206ENST00000593074 KCNMA1Q12791 1236 aa21.74■■□□□ 1.07
CLIP3-206ENST00000593074 ANGEL2Q5VTE6 544 aaKnown RBP21.74■■□□□ 1.07
CLIP3-206ENST00000593074 HOXD13P35453 343 aa21.73■■□□□ 1.07
CLIP3-206ENST00000593074 USP14P54578 494 aa21.73■■□□□ 1.07
CLIP3-206ENST00000593074 UBXN2AP68543 259 aa21.73■■□□□ 1.07
CLIP3-206ENST00000593074 GHRHRQ02643 423 aa21.73■■□□□ 1.07
CLIP3-206ENST00000593074 KNOP1Q1ED39 458 aaKnown RBP21.73■■□□□ 1.07
CLIP3-206ENST00000593074 CCDC122Q5T0U0 273 aa21.73■■□□□ 1.07
CLIP3-206ENST00000593074 SRGAP1Q7Z6B7 1085 aa21.73■■□□□ 1.07
CLIP3-206ENST00000593074 NEK11Q8NG66 645 aa21.73■■□□□ 1.07
CLIP3-206ENST00000593074 GOLGA1Q92805 767 aa21.73■■□□□ 1.07
CLIP3-206ENST00000593074 WDR11Q9BZH6 1224 aa21.73■■□□□ 1.07
CLIP3-206ENST00000593074 ARHGAP20Q9P2F6 1191 aa21.73■■□□□ 1.07
CLIP3-206ENST00000593074 FAM184BQ9ULE4 1060 aa21.73■■□□□ 1.07
CLIP3-206ENST00000593074 RPTORQ8N122 1335 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms