RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 CAPNS2Q96L46 248 aa7.92□□□□□ -1.14
VPS53-217ENST00000575100 AGBL1Q96MI9 1066 aa7.92□□□□□ -1.14
VPS53-217ENST00000575100 NLRP3Q96P20 1036 aa7.92□□□□□ -1.14
VPS53-217ENST00000575100 KCTD15Q96SI1 283 aaPredicted RBP7.92□□□□□ -1.14
VPS53-217ENST00000575100 MRPL4Q9BYD3 311 aaKnown RBP7.92□□□□□ -1.14
VPS53-217ENST00000575100 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.92□□□□□ -1.14
VPS53-217ENST00000575100 SMYD2Q9NRG4 433 aa7.92□□□□□ -1.14
VPS53-217ENST00000575100 ABT1Q9ULW3 272 aaKnown RBP7.92□□□□□ -1.14
VPS53-217ENST00000575100 TLL2Q9Y6L7 1015 aa7.92□□□□□ -1.14
VPS53-217ENST00000575100 RTL9Q8NET4 1388 aa7.92□□□□□ -1.14
VPS53-217ENST00000575100 PCNTO95613 3336 aa7.92□□□□□ -1.14
VPS53-217ENST00000575100 MAP3K6O95382 1288 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 GSPT1P15170 499 aaKnown RBP7.91□□□□□ -1.14
VPS53-217ENST00000575100 CAPN3P20807 821 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 IREB2P48200 963 aaKnown RBP7.91□□□□□ -1.14
VPS53-217ENST00000575100 FCGRTP55899 365 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 MPP2Q14168 576 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 CST9Q5W186 159 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 TTC6Q86TZ1 520 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 ZNF295-AS1Q8N0V1 137 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 VGLL2Q8N8G2 317 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 HHIPL1Q96JK4 782 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 TTC1Q99614 292 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 MENTQ9BUN1 341 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 KIAA1586Q9HCI6 787 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 ADARB2Q9NS39 739 aaKnown RBP7.91□□□□□ -1.14
VPS53-217ENST00000575100 SUCOQ9UBS9 1254 aaKnown RBP7.91□□□□□ -1.14
VPS53-217ENST00000575100 PTPN22Q9Y2R2 807 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 ATP6V0A2Q9Y487 856 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 DUOX1Q9NRD9 1551 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 SPEF2Q9C093 1822 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 PHF20L1A8MW92 1017 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 CIAO1O76071 339 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 MAP2K2P36507 400 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 TIMM10P62072 90 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 APBA1Q02410 837 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 WASHC5Q12768 1159 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 INTS6LQ5JSJ4 861 aaKnown RBP7.91□□□□□ -1.14
VPS53-217ENST00000575100 GK5Q6ZS86 529 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 CCDC84Q86UT8 332 aaPredicted RBP7.91□□□□□ -1.14
VPS53-217ENST00000575100 SUPT20HQ8NEM7 779 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 TBC1D20Q96BZ9 403 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 AIFM3Q96NN9 605 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 KCNK17Q96T54 332 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 EPN3Q9H201 632 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 BRMS1Q9HCU9 246 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 PRDM9Q9NQV7 894 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 GPRC5DQ9NZD1 345 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 TMEM63CQ9P1W3 806 aa7.91□□□□□ -1.14
VPS53-217ENST00000575100 NEMP1O14524 444 aa7.9□□□□□ -1.14
VPS53-217ENST00000575100 PPIP5K2O43314 1243 aa7.9□□□□□ -1.14
VPS53-217ENST00000575100 TLR5O60602 858 aa7.9□□□□□ -1.14
VPS53-217ENST00000575100 TAF5LO75529 589 aa7.9□□□□□ -1.14
VPS53-217ENST00000575100 HSD3B1P14060 373 aa7.9□□□□□ -1.14
VPS53-217ENST00000575100 IL15P40933 162 aaPredicted RBP7.9□□□□□ -1.14
VPS53-217ENST00000575100 RGS19P49795 217 aa7.9□□□□□ -1.14
VPS53-217ENST00000575100 USP14P54578 494 aa7.9□□□□□ -1.14
VPS53-217ENST00000575100 PDE1AP54750 535 aa7.9□□□□□ -1.14
VPS53-217ENST00000575100 FAM209AQ5JX71 171 aa7.9□□□□□ -1.14
VPS53-217ENST00000575100 TMEM240Q5SV17 173 aa7.9□□□□□ -1.14
VPS53-217ENST00000575100 FAM180BQ6P0A1 224 aa7.9□□□□□ -1.14
VPS53-217ENST00000575100 AACSQ86V21 672 aa7.9□□□□□ -1.14
VPS53-217ENST00000575100 FAM43AQ8N2R8 423 aa7.9□□□□□ -1.14
VPS53-217ENST00000575100 OXCT2Q9BYC2 517 aaPredicted RBP7.9□□□□□ -1.14
VPS53-217ENST00000575100 ALG13Q9NP73 1137 aaKnown RBP7.9□□□□□ -1.14
VPS53-217ENST00000575100 CRTAC1Q9NQ79 661 aa7.9□□□□□ -1.14
VPS53-217ENST00000575100 CNNM1Q9NRU3 951 aa7.9□□□□□ -1.14
VPS53-217ENST00000575100 TRMT13Q9NUP7 481 aaKnown RBP7.9□□□□□ -1.14
VPS53-217ENST00000575100 DBNLQ9UJU6 430 aaKnown RBP7.9□□□□□ -1.14
VPS53-217ENST00000575100 GPR52Q9Y2T5 361 aa7.9□□□□□ -1.14
VPS53-217ENST00000575100 FPGT-TNNI3KV9GXZ4 949 aa7.9□□□□□ -1.14
VPS53-217ENST00000575100 K7ESF4 209 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 TRAF5O00463 557 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 EREGO14944 169 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 GNRH1P01148 92 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 BPIP17213 487 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 MX1P20591 662 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 STT3AP46977 705 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 TM4SF4P48230 202 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 RPS26P62854 115 aaKnown RBP7.9□□□□□ -1.15
VPS53-217ENST00000575100 CXCL9Q07325 125 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 TRIP4Q15650 581 aaPredicted RBP7.9□□□□□ -1.15
VPS53-217ENST00000575100 INAVAQ3KP66 663 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 TTBK2Q6IQ55 1244 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 CYP4F22Q6NT55 531 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 CHST15Q7LFX5 561 aaPredicted RBP7.9□□□□□ -1.15
VPS53-217ENST00000575100 REC114Q7Z4M0 266 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 ERC1Q8IUD2 1116 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 SLC41A1Q8IVJ1 513 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 DBNDD2Q9BQY9 259 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 PRR14Q9BWN1 585 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 PHACTR1Q9C0D0 580 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 ELP3Q9H9T3 547 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 SAP30BPQ9UHR5 308 aaKnown RBP7.9□□□□□ -1.15
VPS53-217ENST00000575100 GJD2Q9UKL4 321 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 SYNPO2Q9UMS6 1093 aa7.9□□□□□ -1.15
VPS53-217ENST00000575100 ZNF609O15014 1411 aa7.89□□□□□ -1.15
VPS53-217ENST00000575100 POLR2AP24928 1970 aaKnown RBP7.89□□□□□ -1.15
VPS53-217ENST00000575100 CASP8AP2Q9UKL3 1982 aa7.89□□□□□ -1.15
VPS53-217ENST00000575100 CA12O43570 354 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms