RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 TSG101Q99816 390 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 CAPS2Q9BXY5 557 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 SPATS2LQ9NUQ6 558 aaKnown RBP12.45□□□□□ -0.42
CUX1-218ENST00000560541 STK17AQ9UEE5 414 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 NFU1Q9UMS0 254 aa12.45□□□□□ -0.42
CUX1-218ENST00000560541 PVALEFA0A1B0GWK0 134 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 FAM153BP0C7A2 387 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 LRRC63Q05C16 580 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 COASYQ13057 564 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 RAPGEF1Q13905 1077 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 TRADDQ15628 312 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 FAM153CQ494X1 144 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 TTMPQ5BVD1 217 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 ZNF804AQ7Z570 1209 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 BCAS4Q8TDM0 211 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 PACSIN1Q9BY11 444 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 GOLPH3Q9H4A6 298 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 FAM153AQ9UHL3 310 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 THRAP3Q9Y2W1 955 aaKnown RBP12.44□□□□□ -0.42
CUX1-218ENST00000560541 SAMM50Q9Y512 469 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 FAM170AA1A519 330 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 RAD21O60216 631 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 LCA5LO95447 670 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 LDHCP07864 332 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 SLC16A2P36021 539 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 FXR2P51116 673 aaKnown RBP eCLIP12.44□□□□□ -0.42
CUX1-218ENST00000560541 GUCY2DQ02846 1103 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 ASTE1Q2TB18 679 aaPredicted RBP12.44□□□□□ -0.42
CUX1-218ENST00000560541 FAM83BQ5T0W9 1011 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 ARMC2Q8NEN0 867 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 TBC1D5Q92609 795 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.44□□□□□ -0.42
CUX1-218ENST00000560541 E9PMD0 336 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 NOL4O94818 638 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 UFL1O94874 794 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 FGFR1OPO95684 399 aaKnown RBP12.44□□□□□ -0.42
CUX1-218ENST00000560541 RPSAP08865 295 aaKnown RBP12.44□□□□□ -0.42
CUX1-218ENST00000560541 SLURP2P0DP57 97 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 KLRC1P26715 233 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 EPHB4P54760 987 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 EHHADHQ08426 723 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 SLC9C1Q4G0N8 1177 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 ARMCX6Q7L4S7 300 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 EPB41L5Q9HCM4 733 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 ADAMTS1Q9UHI8 967 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 COL4A3BPQ9Y5P4 624 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 SPATA31A5Q5VU36 1347 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 SPATA31A7Q8IWB4 1347 aa12.44□□□□□ -0.42
CUX1-218ENST00000560541 WNK3Q9BYP7 1800 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 F8W031 263 aaPredicted RBP12.43□□□□□ -0.42
CUX1-218ENST00000560541 HSF2BPO75031 334 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 HEXIM1O94992 359 aaKnown RBP12.43□□□□□ -0.42
CUX1-218ENST00000560541 PDCLQ13371 301 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 COBLL1Q53SF7 1204 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 MFSD14BQ5SR56 506 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 SFMBT2Q5VUG0 894 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 TTBK2Q6IQ55 1244 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 TRIM74Q86UV6 250 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 TRIM73Q86UV7 250 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 FAM133AQ8N9E0 248 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 ARHGEF1Q92888 912 aaKnown RBP12.43□□□□□ -0.42
CUX1-218ENST00000560541 CABS1Q96KC9 395 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 CCDC43Q96MW1 224 aaKnown RBP12.43□□□□□ -0.42
CUX1-218ENST00000560541 ZIM3Q96PE6 472 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 KRT12Q99456 494 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 SH3GL3Q99963 347 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 RAB34Q9BZG1 259 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 PANK4Q9NVE7 773 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 MAST2Q6P0Q8 1798 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 ANKRD33BA6NCL7 494 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 SHOX2O60902 331 aaPredicted RBP12.43□□□□□ -0.42
CUX1-218ENST00000560541 PRLRP16471 622 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 GPSM2P81274 684 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 PPFIA1Q13136 1202 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 CFAP221Q4G0U5 840 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 FAM26FQ5R3K3 315 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 PROCA1Q8NCQ7 364 aaPredicted RBP12.43□□□□□ -0.42
CUX1-218ENST00000560541 MICAL1Q8TDZ2 1067 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 DDX25Q9UHL0 483 aaKnown RBP12.43□□□□□ -0.42
CUX1-218ENST00000560541 NAV1Q8NEY1 1877 aa12.43□□□□□ -0.42
CUX1-218ENST00000560541 AKR1B1P15121 316 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 FKBP3Q00688 224 aaKnown RBP12.42□□□□□ -0.42
CUX1-218ENST00000560541 GRAPQ13588 217 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 ZNF572Q7Z3I7 529 aaPredicted RBP12.42□□□□□ -0.42
CUX1-218ENST00000560541 GRAPLQ8TC17 118 aaPredicted RBP12.42□□□□□ -0.42
CUX1-218ENST00000560541 DNAJC19Q96DA6 116 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 IQCDQ96DY2 449 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 RIOX1Q9H6W3 641 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 CD209Q9NNX6 404 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 A0A087X0T9 212 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 PJA2O43164 708 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 ZEB2O60315 1214 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 PPP1R11O60927 126 aaPredicted RBP12.42□□□□□ -0.42
CUX1-218ENST00000560541 RPS6KA4O75676 772 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 PYGLP06737 847 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 FAM228BP0C875 321 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 KIAA0753Q2KHM9 967 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 C1QTNF12Q5T7M4 302 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 EMBQ6PCB8 327 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 DPP8Q6V1X1 898 aaPredicted RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms