RNA–Protein interactions for RNA: ENST00000556399.5

ARHGEF40-207, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 4,902 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-207ENST00000556399 TMC4Q7Z404 712 aa16.34■□□□□ 0.21
ARHGEF40-207ENST00000556399 VPS52Q8N1B4 723 aa16.34■□□□□ 0.21
ARHGEF40-207ENST00000556399 KLHL29Q96CT2 875 aa16.34■□□□□ 0.21
ARHGEF40-207ENST00000556399 CEP63Q96MT8 703 aa16.34■□□□□ 0.21
ARHGEF40-207ENST00000556399 POLD4Q9HCU8 107 aa16.34■□□□□ 0.21
ARHGEF40-207ENST00000556399 LEMD3Q9Y2U8 911 aa16.34■□□□□ 0.21
ARHGEF40-207ENST00000556399 BACH1O14867 736 aa16.34■□□□□ 0.21
ARHGEF40-207ENST00000556399 PPP1R37O75864 691 aa16.34■□□□□ 0.21
ARHGEF40-207ENST00000556399 HARSP12081 509 aaKnown RBP16.34■□□□□ 0.21
ARHGEF40-207ENST00000556399 NT5C2P49902 561 aa16.34■□□□□ 0.21
ARHGEF40-207ENST00000556399 LLGL1Q15334 1064 aa16.34■□□□□ 0.21
ARHGEF40-207ENST00000556399 CCDC38Q502W7 563 aa16.34■□□□□ 0.21
ARHGEF40-207ENST00000556399 CCDC62Q6P9F0 684 aa16.34■□□□□ 0.21
ARHGEF40-207ENST00000556399 TMEM260Q9NX78 707 aa16.34■□□□□ 0.21
ARHGEF40-207ENST00000556399 MINPP1Q9UNW1 487 aa16.34■□□□□ 0.21
ARHGEF40-207ENST00000556399 RASGRF2O14827 1237 aa16.33■□□□□ 0.21
ARHGEF40-207ENST00000556399 STAMBPO95630 424 aa16.33■□□□□ 0.21
ARHGEF40-207ENST00000556399 ATP2B4P23634 1241 aa16.33■□□□□ 0.21
ARHGEF40-207ENST00000556399 KCNH2Q12809 1159 aa16.33■□□□□ 0.21
ARHGEF40-207ENST00000556399 DPH6Q7L8W6 267 aa16.33■□□□□ 0.21
ARHGEF40-207ENST00000556399 BANK1Q8NDB2 785 aa16.33■□□□□ 0.21
ARHGEF40-207ENST00000556399 PPP2R2AP63151 447 aa16.33■□□□□ 0.2
ARHGEF40-207ENST00000556399 CDKAL1Q5VV42 579 aa16.33■□□□□ 0.2
ARHGEF40-207ENST00000556399 RPAINQ86UA6 219 aa16.33■□□□□ 0.2
ARHGEF40-207ENST00000556399 KSR1Q8IVT5 923 aa16.33■□□□□ 0.2
ARHGEF40-207ENST00000556399 GIMAP8Q8ND71 665 aaPredicted RBP16.33■□□□□ 0.2
ARHGEF40-207ENST00000556399 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.33■□□□□ 0.2
ARHGEF40-207ENST00000556399 XDHP47989 1333 aa16.33■□□□□ 0.2
ARHGEF40-207ENST00000556399 MEFVO15553 781 aaPredicted RBP16.33■□□□□ 0.2
ARHGEF40-207ENST00000556399 PDE6CP51160 858 aa16.33■□□□□ 0.2
ARHGEF40-207ENST00000556399 ADCY1Q08828 1119 aa16.33■□□□□ 0.2
ARHGEF40-207ENST00000556399 RBM12Q9NTZ6 932 aaKnown RBP16.33■□□□□ 0.2
ARHGEF40-207ENST00000556399 CPSF2Q9P2I0 782 aaKnown RBP16.33■□□□□ 0.2
ARHGEF40-207ENST00000556399 MMEP08473 750 aa16.33■□□□□ 0.2
ARHGEF40-207ENST00000556399 DCUN1D2Q6PH85 259 aa16.33■□□□□ 0.2
ARHGEF40-207ENST00000556399 CAPN12Q6ZSI9 719 aa16.33■□□□□ 0.2
ARHGEF40-207ENST00000556399 HSPA6P17066 643 aa16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 GAP43P17677 238 aa16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 SCNN1DP51172 638 aa16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 FERMT1Q9BQL6 677 aa16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 CCDC160A6NGH7 325 aa16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 FOSP01100 380 aaPredicted RBP16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 SARNPP82979 210 aaKnown RBP16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 MIER3Q7Z3K6 550 aa16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 TBC1D1Q86TI0 1168 aaPredicted RBP16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 ELAC2Q9BQ52 826 aaKnown RBP16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 AMNQ9BXJ7 453 aa16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 LARSQ9P2J5 1176 aaKnown RBP16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 AGLP35573 1532 aa16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 USP17L5A8MUK1 530 aa16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 KRT14P02533 472 aa16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 SLMAPQ14BN4 828 aa16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 ANKRD20A3Q5VUR7 823 aa16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 TEKT1Q969V4 418 aa16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 CCDC127Q96BQ5 260 aa16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 EPN3Q9H201 632 aa16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 SNX24Q9Y343 169 aa16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 OVOS2A0A0G2JMS6 1433 aa16.32■□□□□ 0.2
ARHGEF40-207ENST00000556399 E9PMD0 336 aa16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 ECEL1O95672 775 aa16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 IFNB1P01574 187 aa16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 TROVE2P10155 538 aaKnown RBP eCLIP16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 MMGT1Q8N4V1 131 aa16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 MAK16Q9BXY0 300 aaKnown RBP16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 EDEM3Q9BZQ6 932 aa16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 PNMA6FA0A0J9YX94 578 aa16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 ACTN3Q08043 901 aaPredicted RBP16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 SNX1Q13596 522 aa16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 FAM98CQ17RN3 349 aaKnown RBP16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 C6orf118Q5T5N4 469 aa16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 P3H4Q92791 437 aa16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 VCXQ9H320 206 aa16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 PEX19P40855 299 aa16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 MUM1Q2TAK8 710 aa16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 CERKLQ49MI3 558 aaPredicted RBP16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.31■□□□□ 0.22e-7■■■□□ 15.2
ARHGEF40-207ENST00000556399 RAB21Q9UL25 225 aa16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 PXDNQ92626 1479 aa16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 MDH1P40925 334 aaKnown RBP16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 ICA1Q05084 483 aa16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 IWS1Q96ST2 819 aa16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 DNAJC7Q99615 494 aa16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 CNTNAP5Q8WYK1 1306 aa16.31■□□□□ 0.2
ARHGEF40-207ENST00000556399 MYCLP12524 364 aaPredicted RBP16.3■□□□□ 0.2
ARHGEF40-207ENST00000556399 SARSP49591 514 aaKnown RBP16.3■□□□□ 0.2
ARHGEF40-207ENST00000556399 SREK1Q8WXA9 508 aaKnown RBP16.3■□□□□ 0.2
ARHGEF40-207ENST00000556399 FBXL5Q9UKA1 691 aa16.3■□□□□ 0.2
ARHGEF40-207ENST00000556399 ADCY2Q08462 1091 aa16.3■□□□□ 0.2
ARHGEF40-207ENST00000556399 SGO2Q562F6 1265 aa16.3■□□□□ 0.2
ARHGEF40-207ENST00000556399 ZNF473Q8WTR7 871 aaKnown RBP16.3■□□□□ 0.2
ARHGEF40-207ENST00000556399 ZNF653Q96CK0 615 aa16.3■□□□□ 0.2
ARHGEF40-207ENST00000556399 ZIM3Q96PE6 472 aa16.3■□□□□ 0.2
ARHGEF40-207ENST00000556399 C7orf25Q9BPX7 421 aa16.3■□□□□ 0.2
ARHGEF40-207ENST00000556399 IFT172Q9UG01 1749 aa16.3■□□□□ 0.2
ARHGEF40-207ENST00000556399 CASP7P55210 303 aa16.3■□□□□ 0.2
ARHGEF40-207ENST00000556399 IL9RQ01113 521 aa16.3■□□□□ 0.2
ARHGEF40-207ENST00000556399 LRCH2Q5VUJ6 765 aa16.3■□□□□ 0.2
ARHGEF40-207ENST00000556399 ARHGAP24Q8N264 748 aa16.3■□□□□ 0.2
ARHGEF40-207ENST00000556399 HVCN1Q96D96 273 aa16.3■□□□□ 0.2
ARHGEF40-207ENST00000556399 TSNARE1Q96NA8 513 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms