RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ZNF444Q8N0Y2 327 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-212ENST00000552491 MARCH10Q8NA82 808 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-212ENST00000552491 TBC1D5Q92609 795 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 RAD54LQ92698 747 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 COA7Q96BR5 231 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 DNAJC19Q96DA6 116 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 CALML4Q96GE6 196 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 GPR101Q96P66 508 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-212ENST00000552491 RUFY1Q96T51 708 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 SPZ1Q9BXG8 430 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 TANGO6Q9C0B7 1094 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 YY1AP1Q9H869 796 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 STK24Q9Y6E0 443 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 ABCB11O95342 1321 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 DDX60LQ5H9U9 1706 aaKnown RBP5.97□□□□□ -1.45
LIMA1-212ENST00000552491 USP17L5A8MUK1 530 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 RGS20O76081 388 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 MYBP10242 640 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 ERVK-9P63128 1117 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 HDLBPQ00341 1268 aaKnown RBP5.97□□□□□ -1.45
LIMA1-212ENST00000552491 LRRC63Q05C16 580 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 NAB2Q15742 525 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 UAP1Q16222 522 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-212ENST00000552491 CALCRLQ16602 461 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 MEI1Q5TIA1 1274 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 DDX42Q86XP3 938 aaKnown RBP eCLIP5.97□□□□□ -1.45
LIMA1-212ENST00000552491 IFT20Q8IY31 132 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 MREGQ8N565 214 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 RNF10Q8N5U6 811 aaKnown RBP5.97□□□□□ -1.45
LIMA1-212ENST00000552491 LINC00116Q8NCU8 138 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 OR2W6PQ8NHA6 318 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 LSM14BQ9BX40 385 aaKnown RBP5.97□□□□□ -1.45
LIMA1-212ENST00000552491 LRRC4CQ9HCJ2 640 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 C6orf50Q9HD87 102 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 TBC1D7Q9P0N9 293 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 RNF14Q9UBS8 474 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 ADAMTS1Q9UHI8 967 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 PCDHGC5Q9Y5F6 944 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 CAPN7Q9Y6W3 813 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 NAV1Q8NEY1 1877 aa5.97□□□□□ -1.45
LIMA1-212ENST00000552491 SBF2Q86WG5 1849 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 WNK3Q9BYP7 1800 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 MYH7BA7E2Y1 1941 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 NPHP3-ACAD11A0A0J9YXS1 232 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 UBAP1LF5GYI3 381 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 TOM1O60784 492 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 CLSTN1O94985 981 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 FGFR1OPO95684 399 aaKnown RBP5.96□□□□□ -1.45
LIMA1-212ENST00000552491 ZBTB48P10074 688 aaPredicted RBP5.96□□□□□ -1.45
LIMA1-212ENST00000552491 NR1D1P20393 614 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 COASYQ13057 564 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 ITGB3BPQ13352 177 aaPredicted RBP5.96□□□□□ -1.45
LIMA1-212ENST00000552491 CDC37Q16543 378 aaPredicted RBP5.96□□□□□ -1.45
LIMA1-212ENST00000552491 PTGISQ16647 500 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 SPRED3Q2MJR0 410 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 TMEM119Q4V9L6 283 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 SLC10A5Q5PT55 438 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 EMC10Q5UCC4 262 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 SFMBT2Q5VUG0 894 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 MCTP2Q6DN12 878 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 NELFCDQ8IXH7 590 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 KLHL7Q8IXQ5 586 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 CNPY4Q8N129 248 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 REXO1Q8N1G1 1221 aaKnown RBP5.96□□□□□ -1.45
LIMA1-212ENST00000552491 SNX29Q8TEQ0 813 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 ZNF473Q8WTR7 871 aaKnown RBP5.96□□□□□ -1.45
LIMA1-212ENST00000552491 CEP95Q96GE4 821 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 EDEM3Q9BZQ6 932 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 EPN3Q9H201 632 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 NEUROG2Q9H2A3 272 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 CEP72Q9P209 647 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 STK17AQ9UEE5 414 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 TSKSQ9UJT2 592 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 TMEM59LQ9UK28 342 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 ATP6V0A2Q9Y487 856 aa5.96□□□□□ -1.45
LIMA1-212ENST00000552491 FRMPD2Q68DX3 1309 aaPredicted RBP5.96□□□□□ -1.45
LIMA1-212ENST00000552491 H0YGN5 161 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 TRAF5O00463 557 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 MEFVO15553 781 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-212ENST00000552491 PPP1R37O75864 691 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 SERPING1P05155 500 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 ACTN1P12814 892 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 GNA11P29992 359 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 TM4SF1P30408 202 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 FLT3P36888 993 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 CDK8P49336 464 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 IRX3P78415 501 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-212ENST00000552491 PAK2Q13177 524 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 SLC18A3Q16572 532 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 KIAA0753Q2KHM9 967 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 SLC9C1Q4G0N8 1177 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 SWT1Q5T5J6 900 aaKnown RBP5.96□□□□□ -1.46
LIMA1-212ENST00000552491 DPY19L2P1Q6NXN4 242 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 CLEC4GQ6UXB4 293 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 ARHGAP27Q6ZUM4 889 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 CLEC10AQ8IUN9 316 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 CD302Q8IX05 232 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 MYOCDQ8IZQ8 938 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 FAM133AQ8N9E0 248 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 PRPF38AQ8NAV1 312 aaKnown RBP5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms