RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 AXIN1O15169 862 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 ZBTB24O43167 697 aaPredicted RBP12.3□□□□□ -0.44
VPS29-208ENST00000550267 LGR5O75473 907 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 AMHP03971 560 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 ZNF286BP0CG31 522 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 SMCPP49901 116 aaPredicted RBP12.3□□□□□ -0.44
VPS29-208ENST00000550267 HTRA4P83105 476 aaPredicted RBP12.3□□□□□ -0.44
VPS29-208ENST00000550267 ZP2Q05996 745 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 ZNF543Q08ER8 600 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 DGKDQ16760 1214 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 PTPROQ16827 1216 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 EPC2Q52LR7 807 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 TIGD5Q53EQ6 642 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 TCEAL5Q5H9L2 206 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 C20orf194Q5TEA3 1177 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 EP400NLQ6ZTU2 488 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 BANK1Q8NDB2 785 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 DBF4BQ8NFT6 615 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 DCTPP1Q9H773 170 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 COL20A1Q9P218 1284 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 DACH1Q9UI36 760 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 CTNNA3Q9UI47 895 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 PNMA2Q9UL42 364 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 TTC41PQ6P2S7 1318 aa12.3□□□□□ -0.44
VPS29-208ENST00000550267 HAS3O00219 553 aa12.29□□□□□ -0.44
VPS29-208ENST00000550267 FGRP09769 529 aa12.29□□□□□ -0.44
VPS29-208ENST00000550267 GPM6BQ13491 265 aa12.29□□□□□ -0.44
VPS29-208ENST00000550267 KIAA0753Q2KHM9 967 aa12.29□□□□□ -0.44
VPS29-208ENST00000550267 RNF19BQ6ZMZ0 732 aa12.29□□□□□ -0.44
VPS29-208ENST00000550267 RGS22Q8NE09 1264 aa12.29□□□□□ -0.44
VPS29-208ENST00000550267 SYTL5Q8TDW5 730 aaPredicted RBP12.29□□□□□ -0.44
VPS29-208ENST00000550267 OTUD7AQ8TE49 926 aaPredicted RBP12.29□□□□□ -0.44
VPS29-208ENST00000550267 PABPC5Q96DU9 382 aaKnown RBP12.29□□□□□ -0.44
VPS29-208ENST00000550267 KATNAL1Q9BW62 490 aa12.29□□□□□ -0.44
VPS29-208ENST00000550267 KCNH6Q9H252 994 aa12.29□□□□□ -0.44
VPS29-208ENST00000550267 CPVLQ9H3G5 476 aa12.29□□□□□ -0.44
VPS29-208ENST00000550267 TCP11L1Q9NUJ3 509 aa12.29□□□□□ -0.44
VPS29-208ENST00000550267 TRIP12Q14669 1992 aaPredicted RBP12.29□□□□□ -0.44
VPS29-208ENST00000550267 H3BNC9 293 aa12.28□□□□□ -0.44
VPS29-208ENST00000550267 F2P00734 622 aa12.28□□□□□ -0.44
VPS29-208ENST00000550267 GOLGA8HP0CJ92 632 aa12.28□□□□□ -0.44
VPS29-208ENST00000550267 SNHG28P0DPA3 235 aa12.28□□□□□ -0.44
VPS29-208ENST00000550267 STXBP2Q15833 593 aa12.28□□□□□ -0.44
VPS29-208ENST00000550267 HFE2Q6ZVN8 426 aa12.28□□□□□ -0.44
VPS29-208ENST00000550267 NSUN6Q8TEA1 469 aaKnown RBP12.28□□□□□ -0.44
VPS29-208ENST00000550267 SAMD11Q96NU1 681 aa12.28□□□□□ -0.44
VPS29-208ENST00000550267 UBA5Q9GZZ9 404 aa12.28□□□□□ -0.44
VPS29-208ENST00000550267 DDX41Q9UJV9 622 aaKnown RBP12.28□□□□□ -0.44
VPS29-208ENST00000550267 SORBS3O60504 671 aa12.27□□□□□ -0.45
VPS29-208ENST00000550267 UPP2O95045 317 aa12.27□□□□□ -0.45
VPS29-208ENST00000550267 EIF2AK2P19525 551 aaKnown RBP12.27□□□□□ -0.45
VPS29-208ENST00000550267 IRS1P35568 1242 aa12.27□□□□□ -0.45
VPS29-208ENST00000550267 PLEKHG4Q58EX7 1191 aa12.27□□□□□ -0.45
VPS29-208ENST00000550267 ADHFE1Q8IWW8 467 aa12.27□□□□□ -0.45
VPS29-208ENST00000550267 DHX37Q8IY37 1157 aaKnown RBP12.27□□□□□ -0.45
VPS29-208ENST00000550267 PPTC7Q8NI37 304 aa12.27□□□□□ -0.45
VPS29-208ENST00000550267 SNX27Q96L92 541 aa12.27□□□□□ -0.45
VPS29-208ENST00000550267 IWS1Q96ST2 819 aa12.27□□□□□ -0.45
VPS29-208ENST00000550267 YME1L1Q96TA2 773 aa12.27□□□□□ -0.45
VPS29-208ENST00000550267 RMDN3Q96TC7 470 aa12.27□□□□□ -0.45
VPS29-208ENST00000550267 NSUN3Q9H649 340 aaKnown RBP12.27□□□□□ -0.45
VPS29-208ENST00000550267 CLDND1Q9NY35 253 aa12.27□□□□□ -0.45
VPS29-208ENST00000550267 PRKAG3Q9UGI9 489 aa12.27□□□□□ -0.45
VPS29-208ENST00000550267 FAM50BQ9Y247 325 aa12.27□□□□□ -0.45
VPS29-208ENST00000550267 MRVI1Q9Y6F6 885 aa12.27□□□□□ -0.45
VPS29-208ENST00000550267 EMSYQ7Z589 1322 aa12.27□□□□□ -0.45
VPS29-208ENST00000550267 MUC6Q6W4X9 2439 aa12.27□□□□□ -0.45
VPS29-208ENST00000550267 RSPH10B2B2RC85 870 aa12.26□□□□□ -0.45
VPS29-208ENST00000550267 RSPH10BP0C881 870 aa12.26□□□□□ -0.45
VPS29-208ENST00000550267 THPOP40225 353 aa12.26□□□□□ -0.45
VPS29-208ENST00000550267 LAMC2Q13753 1193 aa12.26□□□□□ -0.45
VPS29-208ENST00000550267 COL19A1Q14993 1142 aa12.26□□□□□ -0.45
VPS29-208ENST00000550267 ALX1Q15699 326 aa12.26□□□□□ -0.45
VPS29-208ENST00000550267 CDC37Q16543 378 aaPredicted RBP12.26□□□□□ -0.45
VPS29-208ENST00000550267 ARHGEF16Q5VV41 709 aa12.26□□□□□ -0.45
VPS29-208ENST00000550267 RPAINQ86UA6 219 aa12.26□□□□□ -0.45
VPS29-208ENST00000550267 FBXO11Q86XK2 927 aa12.26□□□□□ -0.45
VPS29-208ENST00000550267 TMEM192Q8IY95 271 aa12.26□□□□□ -0.45
VPS29-208ENST00000550267 OSBPL7Q9BZF2 842 aa12.26□□□□□ -0.45
VPS29-208ENST00000550267 ABCB11O95342 1321 aa12.26□□□□□ -0.45
VPS29-208ENST00000550267 EIF3JO75822 258 aaKnown RBP12.25□□□□□ -0.45
VPS29-208ENST00000550267 FGAP02671 866 aa12.25□□□□□ -0.45
VPS29-208ENST00000550267 LTBRP36941 435 aa12.25□□□□□ -0.45
VPS29-208ENST00000550267 HAND2P61296 217 aa12.25□□□□□ -0.45
VPS29-208ENST00000550267 CLUL1Q15846 466 aa12.25□□□□□ -0.45
VPS29-208ENST00000550267 GPATCH4Q5T3I0 446 aaKnown RBP12.25□□□□□ -0.45
VPS29-208ENST00000550267 SERINC5Q86VE9 423 aa12.25□□□□□ -0.45
VPS29-208ENST00000550267 GPIHBP1Q8IV16 184 aa12.25□□□□□ -0.45
VPS29-208ENST00000550267 TOP1MTQ969P6 601 aa12.25□□□□□ -0.45
VPS29-208ENST00000550267 TTC14Q96N46 770 aa12.25□□□□□ -0.45
VPS29-208ENST00000550267 ZKSCAN3Q9BRR0 538 aa12.25□□□□□ -0.45
VPS29-208ENST00000550267 UPF3BQ9BZI7 483 aaKnown RBP12.25□□□□□ -0.45
VPS29-208ENST00000550267 GMPR2Q9P2T1 348 aaKnown RBP12.25□□□□□ -0.45
VPS29-208ENST00000550267 MUTYHQ9UIF7 546 aa12.25□□□□□ -0.45
VPS29-208ENST00000550267 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.24□□□□□ -0.45
VPS29-208ENST00000550267 TTC24A2A3L6 582 aaPredicted RBP12.24□□□□□ -0.45
VPS29-208ENST00000550267 WNT7AO00755 349 aa12.24□□□□□ -0.45
VPS29-208ENST00000550267 MBTPS2O43462 519 aa12.24□□□□□ -0.45
VPS29-208ENST00000550267 NR3C2P08235 984 aa12.24□□□□□ -0.45
VPS29-208ENST00000550267 CTSHP09668 335 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms