RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 GOLGA8BA8MQT2 603 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 SH2B2O14492 632 aaPredicted RBP8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 ZBTB43O43298 467 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 STX6O43752 255 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 ORC4O43929 436 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 RANBP6O60518 1105 aaKnown RBP8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 KDM4AO75164 1064 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 BRD1O95696 1058 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 CALM1P0DP23 149 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 CALM2P0DP24 149 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 CALM3P0DP25 149 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 MCM4P33991 863 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 CHMP4BP1P59074 171 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 CNTN2Q02246 1040 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 LEXMQ3ZCV2 418 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 LCE2CQ5TA81 110 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 CTR9Q6PD62 1173 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 BRICD5Q6PL45 260 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 CLEC17AQ6ZS10 378 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 SGMS1Q86VZ5 419 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 TBC1D10CQ8IV04 446 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 NECAB1Q8N987 351 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 WASF1Q92558 559 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 LRRC2Q9BYS8 371 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 ADAMTS5Q9UNA0 930 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 TAF6LQ9Y6J9 622 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 CACNA1HO95180 2353 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 C5orf42Q9H799 3197 aa8.16□□□□□ -1.1
DEPDC4-208ENST00000549341 TSPY2A6NKD2 308 aa8.16□□□□□ -1.1
DEPDC4-208ENST00000549341 RBAK-RBAKDNI3L0D1 243 aa8.16□□□□□ -1.1
DEPDC4-208ENST00000549341 ZBED4O75132 1171 aa8.16□□□□□ -1.1
DEPDC4-208ENST00000549341 MYL3P08590 195 aa8.16□□□□□ -1.1
DEPDC4-208ENST00000549341 ZSCAN22P10073 491 aaPredicted RBP8.16□□□□□ -1.1
DEPDC4-208ENST00000549341 PDIA3P30101 505 aaKnown RBP8.16□□□□□ -1.1
DEPDC4-208ENST00000549341 METAP2P50579 478 aaKnown RBP eCLIP8.16□□□□□ -1.1
DEPDC4-208ENST00000549341 HIC1Q14526 733 aa8.16□□□□□ -1.1
DEPDC4-208ENST00000549341 IFIT1BQ5T764 474 aaKnown RBP8.16□□□□□ -1.1
DEPDC4-208ENST00000549341 FAM117BQ6P1L5 589 aa8.16□□□□□ -1.1
DEPDC4-208ENST00000549341 CHST3Q7LGC8 479 aa8.16□□□□□ -1.1
DEPDC4-208ENST00000549341 CATIPQ7Z7H3 387 aa8.16□□□□□ -1.1
DEPDC4-208ENST00000549341 RGS22Q8NE09 1264 aa8.16□□□□□ -1.1
DEPDC4-208ENST00000549341 MRGPRX2Q96LB1 330 aa8.16□□□□□ -1.1
DEPDC4-208ENST00000549341 KATNBL1Q9H079 304 aa8.16□□□□□ -1.1
DEPDC4-208ENST00000549341 KCNH6Q9H252 994 aa8.16□□□□□ -1.1
DEPDC4-208ENST00000549341 ZSWIM5Q9P217 1185 aa8.16□□□□□ -1.1
DEPDC4-208ENST00000549341 NOD1Q9Y239 953 aa8.16□□□□□ -1.1
DEPDC4-208ENST00000549341 NEDD4P46934 1319 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 LOC100996750A0A140TA64 210 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 VPS37CA5D8V6 355 aaPredicted RBP8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 GOLGA8AA7E2F4 631 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 J3QL48 77 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 BAG4O95429 457 aaKnown RBP8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 LARGE1O95461 756 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 NDUFB10O96000 172 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 FGRP09769 529 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 SUPT20HL2P0C7V6 817 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 SYT1P21579 422 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 RFC2P35250 354 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 GCGRP47871 477 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 CDK8P49336 464 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 WDR5P61964 334 aaKnown RBP8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 CCT2P78371 535 aaKnown RBP8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 AKAP17AQ02040 695 aaKnown RBP8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 ZP2Q05996 745 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 SCRN1Q12765 414 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 TRIM29Q14134 588 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 TMEM63BQ5T3F8 832 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 C12orf60Q5U649 245 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 CYB5R4Q7L1T6 521 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 NPAS3Q8IXF0 933 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 TRIM22Q8IYM9 498 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 STK11IPQ8N1F8 1099 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 RETREG2Q8NC44 543 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 PRSS33Q8NF86 280 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 SMARCC2Q8TAQ2 1214 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 PHOSPHO2Q8TCD6 241 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 IGDCC4Q8TDY8 1250 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 MFSD14AQ96MC6 490 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 ZSCAN10Q96SZ4 725 aaPredicted RBP8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 KRTAP4-6Q9BYQ5 205 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 ZSCAN16Q9H4T2 348 aaPredicted RBP8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 KANSL2Q9H9L4 492 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 PDGFCQ9NRA1 345 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 FAM86C1Q9NVL1 165 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 RBM28Q9NW13 759 aaKnown RBP8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 FBXO40Q9UH90 709 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 MUTYHQ9UIF7 546 aa8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 GNEQ9Y223 722 aaKnown RBP8.15□□□□□ -1.1
DEPDC4-208ENST00000549341 TRIOO75962 3097 aa8.15□□□□□ -1.11
DEPDC4-208ENST00000549341 FOCADQ5VW36 1801 aa8.15□□□□□ -1.11
DEPDC4-208ENST00000549341 COL4A4P53420 1690 aaPredicted RBP8.14□□□□□ -1.11
DEPDC4-208ENST00000549341 EPG5Q9HCE0 2579 aa8.14□□□□□ -1.11
DEPDC4-208ENST00000549341 PTPDC1A2A3K4 754 aa8.14□□□□□ -1.11
DEPDC4-208ENST00000549341 DDAH1O94760 285 aa8.14□□□□□ -1.11
DEPDC4-208ENST00000549341 BAIAP3O94812 1187 aa8.14□□□□□ -1.11
DEPDC4-208ENST00000549341 CSPG5O95196 566 aa8.14□□□□□ -1.11
DEPDC4-208ENST00000549341 F13A1P00488 732 aa8.14□□□□□ -1.11
DEPDC4-208ENST00000549341 TSPY3P0CV98 308 aa8.14□□□□□ -1.11
DEPDC4-208ENST00000549341 TSPY8P0CW00 308 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms