RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 SPTLC2O15270 562 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 PEX11AO75192 247 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 MYZAPP0CAP1 466 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 ZNF131P52739 623 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 ITIH3Q06033 890 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 DHX9Q08211 1270 aaKnown RBP10.31□□□□□ -0.76
CLIP1-214ENST00000540539 TAF7Q15545 349 aaPredicted RBP10.31□□□□□ -0.76
CLIP1-214ENST00000540539 SOGA3Q5TF21 947 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 SYDE2Q5VT97 1194 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 PIGWQ7Z7B1 504 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 FOXP4Q8IVH2 680 aaPredicted RBP10.31□□□□□ -0.76
CLIP1-214ENST00000540539 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.31□□□□□ -0.76
CLIP1-214ENST00000540539 SEPT12Q8IYM1 358 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 MARCH10Q8NA82 808 aaPredicted RBP10.31□□□□□ -0.76
CLIP1-214ENST00000540539 ASAP3Q8TDY4 903 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 ZNF317Q96PQ6 595 aaPredicted RBP10.31□□□□□ -0.76
CLIP1-214ENST00000540539 FBXO9Q9UK97 447 aaPredicted RBP10.31□□□□□ -0.76
CLIP1-214ENST00000540539 LRCH1Q9Y2L9 728 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 TJP3O95049 919 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 CMA1P23946 247 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 GRAMD4Q6IC98 578 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 CCDC129Q6ZRS4 1044 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 ZNF572Q7Z3I7 529 aaPredicted RBP10.31□□□□□ -0.76
CLIP1-214ENST00000540539 CYP4X1Q8N118 509 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 STKLD1Q8NE28 680 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 STK32AQ8WU08 396 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 CATSPER2Q96P56 530 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 MED15Q96RN5 788 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 JADE2Q9NQC1 790 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 ABHD10Q9NUJ1 306 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 PDP2Q9P2J9 529 aa10.31□□□□□ -0.76
CLIP1-214ENST00000540539 ESYT3A0FGR9 886 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 CHL1O00533 1208 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 MAGEB3O15480 346 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 ASAP2O43150 1006 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 RAD21O60216 631 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 ALDH1L1O75891 902 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 GSTT2P0CG29 244 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 GSTT2BP0CG30 244 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 GNAT2P19087 354 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 SYKP43405 635 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 PTDSS1P48651 473 aaKnown RBP10.3□□□□□ -0.76
CLIP1-214ENST00000540539 ATP8B2P98198 1209 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 RCN2Q14257 317 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 GALNTL6Q49A17 601 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 CCDC122Q5T0U0 273 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 ASRGL1Q7L266 308 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 METTL16Q86W50 562 aaKnown RBP10.3□□□□□ -0.76
CLIP1-214ENST00000540539 SLC43A3Q8NBI5 491 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 ENOX1Q8TC92 643 aaKnown RBP10.3□□□□□ -0.76
CLIP1-214ENST00000540539 SMC6Q96SB8 1091 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 FAM129AQ9BZQ8 928 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 SLC52A2Q9HAB3 445 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 GGT7Q9UJ14 662 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 TRIM33Q9UPN9 1127 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 PCDHA5Q9Y5H7 936 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 SIPA1L3O60292 1781 aaPredicted RBP10.3□□□□□ -0.76
CLIP1-214ENST00000540539 MYPNQ86TC9 1320 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 ANO9A1A5B4 782 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 MAGEA13PA6NCF6 341 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 ZSCAN5CA6NGD5 496 aaPredicted RBP10.3□□□□□ -0.76
CLIP1-214ENST00000540539 DCDC2CA8MYV0 355 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 RNF225M0QZC1 329 aaPredicted RBP10.3□□□□□ -0.76
CLIP1-214ENST00000540539 NDUFA10O95299 355 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 YEATS4O95619 227 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 VDRP11473 427 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 IDEP14735 1019 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 KRT9P35527 623 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 HALP42357 657 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 COPS2P61201 443 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 BCL2A1Q16548 175 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 MUM1Q2TAK8 710 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 ODF2Q5BJF6 829 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 BEND3Q5T5X7 828 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 ERMARDQ5T6L9 678 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 DAB2IPQ5VWQ8 1189 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 SLC4A10Q6U841 1118 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 MAP7D3Q8IWC1 876 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 RNF10Q8N5U6 811 aaKnown RBP10.3□□□□□ -0.76
CLIP1-214ENST00000540539 OR2W6PQ8NHA6 318 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 SREK1Q8WXA9 508 aaKnown RBP10.3□□□□□ -0.76
CLIP1-214ENST00000540539 MAP4K1Q92918 833 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 MAML3Q96JK9 1138 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 RAB17Q9H0T7 212 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 TSPYL4Q9UJ04 414 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 ZNF711Q9Y462 761 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 TOGARAM1Q9Y4F4 1720 aa10.3□□□□□ -0.76
CLIP1-214ENST00000540539 TESPA1A2RU30 521 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-214ENST00000540539 ERVV-2B6SEH9 535 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 SHBGP04278 402 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 GLI1P08151 1106 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 PORP16435 677 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-214ENST00000540539 CABP4P57796 275 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 HERVK_113P62684 666 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 BNIP1Q12981 228 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 BIRC3Q13489 604 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 SH3D19Q5HYK7 790 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 C8orf74Q6P047 294 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 POTEAQ6S8J7 498 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 WDR75Q8IWA0 830 aaKnown RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms