RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 AS3MTQ9HBK9 375 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 CEP72Q9P209 647 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 JRKLQ9Y4A0 524 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 CCDC169A6NNP5 214 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 SFI1A8K8P3 1242 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 PSMC2P35998 433 aaKnown RBP11.84□□□□□ -0.51
CLIP1-213ENST00000540338 PRELPP51888 382 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 SETQ01105 290 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-213ENST00000540338 TMEM132AQ24JP5 1023 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 DALRD3Q5D0E6 543 aaKnown RBP11.84□□□□□ -0.51
CLIP1-213ENST00000540338 KIAA0895Q8NCT3 520 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 ZFP91Q96JP5 570 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-213ENST00000540338 DNAJC7Q99615 494 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 VCPKMTQ9H867 229 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 PCDHAC2Q9Y5I4 1007 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 BZW2Q9Y6E2 419 aaKnown RBP11.84□□□□□ -0.51
CLIP1-213ENST00000540338 BUB1O43683 1085 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 EYA4O95677 639 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 KIAA0753Q2KHM9 967 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 FAM186BQ8IYM0 893 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 DYDC2Q96IM9 177 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 MMTAG2Q9BU76 263 aaKnown RBP11.83□□□□□ -0.52
CLIP1-213ENST00000540338 TAOK3Q9H2K8 898 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 TMOD4Q9NZQ9 345 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 PITPNM2Q9BZ72 1349 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 PLIN4Q96Q06 1357 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 IGKV6D-41A0A0C4DH26 115 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 A0A1W2PQJ5 194 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 SPDYE2BA6NHP3 402 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 GOLGA6L10A6NI86 522 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 DKC1O60832 514 aaKnown RBP eCLIP11.83□□□□□ -0.52
CLIP1-213ENST00000540338 SPDYE6P0CI01 402 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 STAT1P42224 750 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 SP4Q02446 784 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 CEP55Q53EZ4 464 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 ARHGEF16Q5VV41 709 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 NLRX1Q86UT6 975 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 LDHDQ86WU2 507 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 TESPA1A2RU30 521 aaPredicted RBP11.83□□□□□ -0.52
CLIP1-213ENST00000540338 NPM3O75607 178 aaKnown RBP11.83□□□□□ -0.52
CLIP1-213ENST00000540338 TNFAIP3P21580 790 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 PBX1P40424 430 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 KLK7P49862 253 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 KCNH2Q12809 1159 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 HLTFQ14527 1009 aaKnown RBP eCLIP11.83□□□□□ -0.52
CLIP1-213ENST00000540338 SMC1AQ14683 1233 aaKnown RBP11.83□□□□□ -0.52
CLIP1-213ENST00000540338 LONRF2Q1L5Z9 754 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 CFAP221Q4G0U5 840 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 TMEM119Q4V9L6 283 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 CATSPER3Q86XQ3 398 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 TMEM139Q8IV31 216 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 RGL1Q9NZL6 768 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 EXOC7Q9UPT5 735 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 SNED1Q8TER0 1413 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 K7ENM7 598 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 BACH1O14867 736 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 CYP11B2P19099 503 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 SREBF1P36956 1147 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 ECE1P42892 770 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 PRPF4BQ13523 1007 aaKnown RBP11.83□□□□□ -0.52
CLIP1-213ENST00000540338 PRPF38AQ8NAV1 312 aaKnown RBP11.83□□□□□ -0.52
CLIP1-213ENST00000540338 ACER1Q8TDN7 264 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 IWS1Q96ST2 819 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 POLD4Q9HCU8 107 aa11.83□□□□□ -0.52
CLIP1-213ENST00000540338 PNMA6AP0CW24 399 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-213ENST00000540338 USP14P54578 494 aa11.82□□□□□ -0.52
CLIP1-213ENST00000540338 PDE4CQ08493 712 aa11.82□□□□□ -0.52
CLIP1-213ENST00000540338 FAM133AQ8N9E0 248 aa11.82□□□□□ -0.52
CLIP1-213ENST00000540338 EPC1Q9H2F5 836 aa11.82□□□□□ -0.52
CLIP1-213ENST00000540338 TYW1Q9NV66 732 aaKnown RBP11.82□□□□□ -0.52
CLIP1-213ENST00000540338 FIGNQ5HY92 759 aa11.82□□□□□ -0.52
CLIP1-213ENST00000540338 C8orf74Q6P047 294 aa11.82□□□□□ -0.52
CLIP1-213ENST00000540338 ZMYND15Q9H091 742 aa11.82□□□□□ -0.52
CLIP1-213ENST00000540338 SHTN1A0MZ66 631 aa11.82□□□□□ -0.52
CLIP1-213ENST00000540338 ANO9A1A5B4 782 aa11.82□□□□□ -0.52
CLIP1-213ENST00000540338 MED24O75448 989 aa11.82□□□□□ -0.52
CLIP1-213ENST00000540338 MOCS3O95396 460 aa11.82□□□□□ -0.52
CLIP1-213ENST00000540338 NR3C1P04150 777 aa11.82□□□□□ -0.52
CLIP1-213ENST00000540338 TNNC1P63316 161 aa11.82□□□□□ -0.52
CLIP1-213ENST00000540338 REEP2Q9BRK0 252 aa11.82□□□□□ -0.52
CLIP1-213ENST00000540338 TUFT1Q9NNX1 390 aa11.82□□□□□ -0.52
CLIP1-213ENST00000540338 MYO5AQ9Y4I1 1855 aaKnown RBP11.81□□□□□ -0.52
CLIP1-213ENST00000540338 MSH4O15457 936 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 LMAN1P49257 510 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 RPS6KA1Q15418 735 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 EDRF1Q3B7T1 1238 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 ZFYVE27Q5T4F4 411 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 HAS1Q92839 578 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 TMEM39BQ9GZU3 492 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 TMX2Q9Y320 296 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 IPO5O00410 1097 aaKnown RBP11.81□□□□□ -0.52
CLIP1-213ENST00000540338 PDXKO00764 312 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 BCRP11274 1271 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 DPEP1P16444 411 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 OAS2P29728 719 aaKnown RBP11.81□□□□□ -0.52
CLIP1-213ENST00000540338 ODF2Q5BJF6 829 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 XKR9Q5GH70 373 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 PDXDC1Q6P996 788 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 KCNK18Q7Z418 384 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 ZBTB9Q96C00 473 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms