RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 ECM2O94769 699 aaPredicted RBP11.16□□□□□ -0.62
MCF2-209ENST00000520602 HARSP12081 509 aaKnown RBP11.16□□□□□ -0.62
MCF2-209ENST00000520602 TNFAIP3P21580 790 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 OAS2P29728 719 aaKnown RBP11.16□□□□□ -0.62
MCF2-209ENST00000520602 KCNH2Q12809 1159 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 RASA3Q14644 834 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 FAM186BQ8IYM0 893 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 TCHPQ9BT92 498 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 WDR11Q9BZH6 1224 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 MLXIPQ9HAP2 919 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 PARVGQ9HBI0 331 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 BLOC1S4Q9NUP1 217 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 AKAP11Q9UKA4 1901 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 MYH3P11055 1940 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 MED24O75448 989 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 AFPP02771 609 aaKnown RBP11.16□□□□□ -0.62
MCF2-209ENST00000520602 TAF1P21675 1872 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 MAP3K9P80192 1104 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 GFPT1Q06210 699 aaPredicted RBP11.16□□□□□ -0.62
MCF2-209ENST00000520602 GABPAQ06546 454 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 EHHADHQ08426 723 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 FAM160B2Q86V87 743 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 CATSPER3Q86XQ3 398 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 SMAP1Q8IYB5 467 aaPredicted RBP11.16□□□□□ -0.62
MCF2-209ENST00000520602 GLIS3Q8NEA6 775 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 CCDC127Q96BQ5 260 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 EHD4Q9H223 541 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 TMOD4Q9NZQ9 345 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 ZNRF3Q9ULT6 936 aa11.16□□□□□ -0.62
MCF2-209ENST00000520602 GOLGA6L10A6NI86 522 aa11.15□□□□□ -0.62
MCF2-209ENST00000520602 KLRC4O43908 158 aa11.15□□□□□ -0.62
MCF2-209ENST00000520602 VAV2P52735 878 aa11.15□□□□□ -0.62
MCF2-209ENST00000520602 SPP2Q13103 211 aa11.15□□□□□ -0.62
MCF2-209ENST00000520602 LONRF2Q1L5Z9 754 aa11.15□□□□□ -0.62
MCF2-209ENST00000520602 PRAMEF18Q5VWM3 479 aa11.15□□□□□ -0.62
MCF2-209ENST00000520602 MCF2L2Q86YR7 1114 aa11.15□□□□□ -0.62
MCF2-209ENST00000520602 FAM151AQ8WW52 585 aa11.15□□□□□ -0.62
MCF2-209ENST00000520602 DUSP9Q99956 384 aaKnown RBP11.15□□□□□ -0.62
MCF2-209ENST00000520602 L2HGDHQ9H9P8 463 aa11.15□□□□□ -0.62
MCF2-209ENST00000520602 METTL14Q9HCE5 456 aaKnown RBP11.15□□□□□ -0.62
MCF2-209ENST00000520602 DDX41Q9UJV9 622 aaKnown RBP11.15□□□□□ -0.62
MCF2-209ENST00000520602 CEP104O60308 925 aa11.15□□□□□ -0.62
MCF2-209ENST00000520602 PLEKP08567 350 aaPredicted RBP11.15□□□□□ -0.62
MCF2-209ENST00000520602 STAT1P42224 750 aa11.15□□□□□ -0.62
MCF2-209ENST00000520602 SMTNP53814 917 aa11.15□□□□□ -0.62
MCF2-209ENST00000520602 BRD3Q15059 726 aa11.15□□□□□ -0.62
MCF2-209ENST00000520602 C8orf74Q6P047 294 aa11.15□□□□□ -0.62
MCF2-209ENST00000520602 KLHL7Q8IXQ5 586 aa11.15□□□□□ -0.62
MCF2-209ENST00000520602 REEP2Q9BRK0 252 aa11.15□□□□□ -0.62
MCF2-209ENST00000520602 SELENOOQ9BVL4 669 aa11.15□□□□□ -0.62
MCF2-209ENST00000520602 FAM184BQ9ULE4 1060 aa11.15□□□□□ -0.62
MCF2-209ENST00000520602 PNMA6AP0CW24 399 aaPredicted RBP11.15□□□□□ -0.63
MCF2-209ENST00000520602 KNOP1Q1ED39 458 aaKnown RBP11.15□□□□□ -0.63
MCF2-209ENST00000520602 MTMR9Q96QG7 549 aa11.15□□□□□ -0.63
MCF2-209ENST00000520602 IPO5O00410 1097 aaKnown RBP11.14□□□□□ -0.63
MCF2-209ENST00000520602 PPP1R11O60927 126 aaPredicted RBP11.14□□□□□ -0.63
MCF2-209ENST00000520602 FTCDO95954 541 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 NMT1P30419 496 aaKnown RBP11.14□□□□□ -0.63
MCF2-209ENST00000520602 PSMC6P62333 389 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 CEP55Q53EZ4 464 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 DNAJC21Q5F1R6 531 aaKnown RBP11.14□□□□□ -0.63
MCF2-209ENST00000520602 MMTAG2Q9BU76 263 aaKnown RBP11.14□□□□□ -0.63
MCF2-209ENST00000520602 GCNT4Q9P109 453 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 ROBO3Q96MS0 1386 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 SPDYE2BA6NHP3 402 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 TFRCP02786 760 aaKnown RBP11.14□□□□□ -0.63
MCF2-209ENST00000520602 NR3C1P04150 777 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 ATP1A1P05023 1023 aaKnown RBP11.14□□□□□ -0.63
MCF2-209ENST00000520602 TUBBP07437 444 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 SPDYE6P0CI01 402 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 SEMA3FQ13275 785 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 LMBR1Q8WVP7 490 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 FAM212AQ96EL1 285 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 AGBL1Q96MI9 1066 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 RNF225M0QZC1 329 aaPredicted RBP11.14□□□□□ -0.63
MCF2-209ENST00000520602 MSH4O15457 936 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 LRRN2O75325 713 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 CYP11B2P19099 503 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 PSMC2P35998 433 aaKnown RBP11.14□□□□□ -0.63
MCF2-209ENST00000520602 C2orf54Q08AI8 447 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 RPS6KA1Q15418 735 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 IDI2Q9BXS1 227 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 BCCIPQ9P287 314 aaKnown RBP eCLIP11.14□□□□□ -0.63
MCF2-209ENST00000520602 HYOU1Q9Y4L1 999 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 DUSP10Q9Y6W6 482 aa11.14□□□□□ -0.63
MCF2-209ENST00000520602 RSPH10B2B2RC85 870 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 GFPT2O94808 682 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 ERLIN2O94905 339 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 RSPH10BP0C881 870 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 MYBP10242 640 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 GAP43P17677 238 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 PRELPP51888 382 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 NBPF9Q3BBW0 867 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 DCAF15Q66K64 600 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 CENPPQ6IPU0 288 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 MAATS1Q7Z4T9 603 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 KSR1Q8IVT5 923 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 CTNNBL1Q8WYA6 563 aaPredicted RBP11.13□□□□□ -0.63
MCF2-209ENST00000520602 HAS1Q92839 578 aa11.13□□□□□ -0.63
MCF2-209ENST00000520602 VCPKMTQ9H867 229 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms