RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 TBKBP1A7MCY6 615 aa12.05□□□□□ -0.48
LIMCH1-208ENST00000508501 GGPS1O95749 300 aa12.05□□□□□ -0.48
LIMCH1-208ENST00000508501 AFPP02771 609 aaKnown RBP12.05□□□□□ -0.48
LIMCH1-208ENST00000508501 RBL2Q08999 1139 aa12.05□□□□□ -0.48
LIMCH1-208ENST00000508501 TMEM154Q6P9G4 183 aa12.05□□□□□ -0.48
LIMCH1-208ENST00000508501 PPP4R3CPQ6ZMV5 832 aa12.05□□□□□ -0.48
LIMCH1-208ENST00000508501 NME9Q86XW9 330 aa12.05□□□□□ -0.48
LIMCH1-208ENST00000508501 COG1Q8WTW3 980 aa12.05□□□□□ -0.48
LIMCH1-208ENST00000508501 BLZF1Q9H2G9 400 aa12.05□□□□□ -0.48
LIMCH1-208ENST00000508501 PLEKHA4Q9H4M7 779 aa12.05□□□□□ -0.48
LIMCH1-208ENST00000508501 ST7Q9NRC1 585 aa12.05□□□□□ -0.48
LIMCH1-208ENST00000508501 YARSP54577 528 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 SETD3Q86TU7 594 aaPredicted RBP12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 MIGA1Q8NAN2 632 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 DEPTORQ8TB45 409 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 COQ7Q99807 217 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 SMYD2Q9NRG4 433 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 SMG5Q9UPR3 1016 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 PCDHA5Q9Y5H7 936 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 GOLGA8RI6L899 631 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 ENC1O14682 589 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 MAP3K13O43283 966 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 XPOTO43592 962 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 S100A9P06702 114 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 NFKBIAP25963 317 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 ARL4AP40617 200 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 GOLGA8FQ08AF8 430 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 GOLGA8DPQ0D2H9 430 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 TFCP2Q12800 502 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 KRT26Q7Z3Y9 468 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 RSPH1Q8WYR4 309 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 PHACTR3Q96KR7 559 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 FTOQ9C0B1 505 aaKnown RBP eCLIP12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 PARVGQ9HBI0 331 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 NFU1Q9UMS0 254 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 SMCO2A6NFE2 343 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 PDE6AP16499 860 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 PGM1P36871 562 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 ANGPT1Q15389 498 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 ZNF658Q5TYW1 1059 aaPredicted RBP12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 BLIDQ8IZY5 108 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 NCLNQ969V3 563 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 PHF21AQ96BD5 680 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 ALKBH8Q96BT7 664 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 SIKE1Q9BRV8 207 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 PTPN22Q9Y2R2 807 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 ZMYM6O95789 1325 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 MED7O43513 233 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 RHOBTB1O94844 696 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 HSPA1AP0DMV8 641 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 HSPA1BP0DMV9 641 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 RXRAP19793 462 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 PSMC2P35998 433 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 PRUNE1Q86TP1 453 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 NLRX1Q86UT6 975 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 CEP95Q96GE4 821 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 QKIQ96PU8 341 aaKnown RBP eCLIP12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 OLFML3Q9NRN5 406 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 KIF17Q9P2E2 1029 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 PCDHA13Q9Y5I0 950 aa12.04□□□□□ -0.48
LIMCH1-208ENST00000508501 ABCC12Q96J65 1359 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 SPDYE16A6NNV3 312 aaPredicted RBP12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 AGTP01019 485 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 PTPREP23469 700 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 GGCXP38435 758 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 IFRD2Q12894 506 aaPredicted RBP12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 LAMB3Q13751 1172 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 KIF19Q2TAC6 998 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 ADCK5Q3MIX3 580 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 SPDYE2Q495Y8 402 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 TNNI3KQ59H18 835 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 NAA35Q5VZE5 725 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 TTBK2Q6IQ55 1244 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 SLC26A7Q8TE54 656 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 DEPDC1BQ8WUY9 529 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 RBM41Q96IZ5 413 aaKnown RBP12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 CATSPER2Q96P56 530 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 CNPY3Q9BT09 278 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 FOXP1Q9H334 677 aaPredicted RBP12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 GOLPH3LQ9H4A5 285 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 RCOR1Q9UKL0 485 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 FPGT-TNNI3KV9GXZ4 949 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 ZFYVE9O95405 1425 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 GPAA1O43292 621 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 DTNBO60941 627 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 EIF2S1P05198 315 aaKnown RBP12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 CORO7P57737 925 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 PURAQ00577 322 aaKnown RBP12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 MYL7Q01449 175 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 PPM1KQ8N3J5 372 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 BEGAINQ9BUH8 593 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 NCOA5Q9HCD5 579 aaKnown RBP12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 ARHGAP31Q2M1Z3 1444 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 KRT19P08727 400 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 SAT1P21673 171 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 WLSQ5T9L3 541 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 SPATA21Q7Z572 469 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 TEKT4Q8WW24 435 aa12.03□□□□□ -0.48
LIMCH1-208ENST00000508501 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms