RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 RPTNQ6XPR3 784 aa5.98□□□□□ -1.45
NUP54-206ENST00000508465 TMC4Q7Z404 712 aa5.98□□□□□ -1.45
NUP54-206ENST00000508465 SLCO6A1Q86UG4 719 aa5.98□□□□□ -1.45
NUP54-206ENST00000508465 CCDC146Q8IYE0 955 aa5.98□□□□□ -1.45
NUP54-206ENST00000508465 THUMPD2Q9BTF0 503 aaKnown RBP5.98□□□□□ -1.45
NUP54-206ENST00000508465 TNFRSF12AQ9NP84 129 aa5.98□□□□□ -1.45
NUP54-206ENST00000508465 USP40Q9NVE5 1235 aa5.98□□□□□ -1.45
NUP54-206ENST00000508465 ERVK13-1Q9NX77 482 aa5.98□□□□□ -1.45
NUP54-206ENST00000508465 SRP68Q9UHB9 627 aaKnown RBP5.98□□□□□ -1.45
NUP54-206ENST00000508465 FBXL21Q9UKT6 434 aa5.98□□□□□ -1.45
NUP54-206ENST00000508465 PCDHB14Q9Y5E9 798 aa5.98□□□□□ -1.45
NUP54-206ENST00000508465 IRS2Q9Y4H2 1338 aa5.98□□□□□ -1.45
NUP54-206ENST00000508465 MAP3K5Q99683 1374 aa5.97□□□□□ -1.45
NUP54-206ENST00000508465 FFAR3O14843 346 aa5.97□□□□□ -1.45
NUP54-206ENST00000508465 RPS6KA4O75676 772 aa5.97□□□□□ -1.45
NUP54-206ENST00000508465 CYP19A1P11511 503 aaPredicted RBP5.97□□□□□ -1.45
NUP54-206ENST00000508465 CANXP27824 592 aaKnown RBP5.97□□□□□ -1.45
NUP54-206ENST00000508465 BMP8BP34820 402 aa5.97□□□□□ -1.45
NUP54-206ENST00000508465 RFC4P35249 363 aa5.97□□□□□ -1.45
NUP54-206ENST00000508465 PUM1Q14671 1186 aaKnown RBP eCLIP5.97□□□□□ -1.45
NUP54-206ENST00000508465 CDCP2Q5VXM1 449 aa5.97□□□□□ -1.45
NUP54-206ENST00000508465 NLGN2Q8NFZ4 835 aa5.97□□□□□ -1.45
NUP54-206ENST00000508465 FBXO27Q8NI29 283 aa5.97□□□□□ -1.45
NUP54-206ENST00000508465 RTF1Q92541 710 aaKnown RBP5.97□□□□□ -1.45
NUP54-206ENST00000508465 CRELD1Q96HD1 420 aa5.97□□□□□ -1.45
NUP54-206ENST00000508465 ZNF496Q96IT1 587 aaPredicted RBP5.97□□□□□ -1.45
NUP54-206ENST00000508465 PLEKHF1Q96S99 279 aa5.97□□□□□ -1.45
NUP54-206ENST00000508465 RRP7AQ9Y3A4 280 aaKnown RBP5.97□□□□□ -1.45
NUP54-206ENST00000508465 RGPD3A6NKT7 1758 aaPredicted RBP5.97□□□□□ -1.45
NUP54-206ENST00000508465 RGPD4Q7Z3J3 1758 aa5.97□□□□□ -1.45
NUP54-206ENST00000508465 CASZ1Q86V15 1759 aa5.97□□□□□ -1.45
NUP54-206ENST00000508465 LY75O60449 1722 aa5.96□□□□□ -1.45
NUP54-206ENST00000508465 PAPPAQ13219 1627 aa5.96□□□□□ -1.45
NUP54-206ENST00000508465 A0A1W2PQJ5 194 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 PRAMEF22A3QJZ6 481 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 K7ESM1 405 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 MEIS1O00470 390 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 TLR3O15455 904 aaKnown RBP5.96□□□□□ -1.46
NUP54-206ENST00000508465 PRICKLE3O43900 615 aaPredicted RBP5.96□□□□□ -1.46
NUP54-206ENST00000508465 ZNF205O95201 554 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 ATE1O95260 518 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 A1BGP04217 495 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 MMP10P09238 476 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 LIMS1P48059 325 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 PIP4K2AP48426 406 aaPredicted RBP5.96□□□□□ -1.46
NUP54-206ENST00000508465 NFE2L2Q16236 605 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 GPR162Q16538 588 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 PLEKHN1Q494U1 663 aaPredicted RBP5.96□□□□□ -1.46
NUP54-206ENST00000508465 CCDC184Q52MB2 194 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 ZNF790Q6PG37 636 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 HHIPL2Q6UWX4 724 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 TTC5Q8N0Z6 440 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 MKRN2Q9H000 416 aaKnown RBP5.96□□□□□ -1.46
NUP54-206ENST00000508465 PRKRIP1Q9H875 184 aaPredicted RBP5.96□□□□□ -1.46
NUP54-206ENST00000508465 BRMS1Q9HCU9 246 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 IMPACTQ9P2X3 320 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 SUSD2Q9UGT4 822 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 MINPP1Q9UNW1 487 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 PCDHB12Q9Y5F1 795 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 MYBBP1AQ9BQG0 1328 aaKnown RBP5.96□□□□□ -1.46
NUP54-206ENST00000508465 UTRNP46939 3433 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 LRP5O75197 1615 aa5.96□□□□□ -1.46
NUP54-206ENST00000508465 SORBS3O60504 671 aa5.95□□□□□ -1.46
NUP54-206ENST00000508465 GYS1P13807 737 aa5.95□□□□□ -1.46
NUP54-206ENST00000508465 VAV1P15498 845 aa5.95□□□□□ -1.46
NUP54-206ENST00000508465 IGFBP6P24592 240 aaPredicted RBP5.95□□□□□ -1.46
NUP54-206ENST00000508465 HMGB2P26583 209 aaKnown RBP5.95□□□□□ -1.46
NUP54-206ENST00000508465 RIPK4P57078 832 aa5.95□□□□□ -1.46
NUP54-206ENST00000508465 ZNF200P98182 395 aaPredicted RBP5.95□□□□□ -1.46
NUP54-206ENST00000508465 TAF7Q15545 349 aaPredicted RBP5.95□□□□□ -1.46
NUP54-206ENST00000508465 HLA-DQA1Q5Y7H0 255 aa5.95□□□□□ -1.46
NUP54-206ENST00000508465 JAMLQ86YT9 394 aa5.95□□□□□ -1.46
NUP54-206ENST00000508465 NAT16Q8N8M0 369 aa5.95□□□□□ -1.46
NUP54-206ENST00000508465 ZNF512BQ96KM6 892 aaPredicted RBP5.95□□□□□ -1.46
NUP54-206ENST00000508465 CNNM2Q9H8M5 875 aa5.95□□□□□ -1.46
NUP54-206ENST00000508465 MRS2Q9HD23 443 aa5.95□□□□□ -1.46
NUP54-206ENST00000508465 AP5S1Q9NUS5 200 aa5.95□□□□□ -1.46
NUP54-206ENST00000508465 GFOD1Q9NXC2 390 aa5.95□□□□□ -1.46
NUP54-206ENST00000508465 FAN1Q9Y2M0 1017 aa5.95□□□□□ -1.46
NUP54-206ENST00000508465 USP16Q9Y5T5 823 aa5.95□□□□□ -1.46
NUP54-206ENST00000508465 PLEKHG2Q9H7P9 1386 aa5.94□□□□□ -1.46
NUP54-206ENST00000508465 C4BP0C0L5 1744 aa5.94□□□□□ -1.46
NUP54-206ENST00000508465 A0A0G2JLW4 131 aa5.94□□□□□ -1.46
NUP54-206ENST00000508465 STARD3NLO95772 234 aa5.94□□□□□ -1.46
NUP54-206ENST00000508465 POLR2BP30876 1174 aaKnown RBP5.94□□□□□ -1.46
NUP54-206ENST00000508465 TMPOP42166 694 aaKnown RBP5.94□□□□□ -1.46
NUP54-206ENST00000508465 FOXO4P98177 505 aa5.94□□□□□ -1.46
NUP54-206ENST00000508465 WDR43Q15061 677 aaKnown RBP eCLIP5.94□□□□□ -1.46
NUP54-206ENST00000508465 NT5DC1Q5TFE4 455 aa5.94□□□□□ -1.46
NUP54-206ENST00000508465 OVOS1Q6IE37 1185 aa5.94□□□□□ -1.46
NUP54-206ENST00000508465 PAQR3Q6TCH7 311 aa5.94□□□□□ -1.46
NUP54-206ENST00000508465 LSRQ86X29 649 aaPredicted RBP5.94□□□□□ -1.46
NUP54-206ENST00000508465 JMJD8Q96S16 334 aa5.94□□□□□ -1.46
NUP54-206ENST00000508465 ANTXR1Q9H6X2 564 aa5.94□□□□□ -1.46
NUP54-206ENST00000508465 PRR13Q9NZ81 148 aa5.94□□□□□ -1.46
NUP54-206ENST00000508465 ZBTB1Q9Y2K1 713 aa5.94□□□□□ -1.46
NUP54-206ENST00000508465 LAS1LQ9Y4W2 734 aaKnown RBP5.94□□□□□ -1.46
NUP54-206ENST00000508465 TUBGCP6Q96RT7 1819 aa5.94□□□□□ -1.46
NUP54-206ENST00000508465 MAPK8IP3Q9UPT6 1336 aa5.94□□□□□ -1.46
NUP54-206ENST00000508465 SCN11AQ9UI33 1791 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms