RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 SPDYE3A6NKU9 549 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 ESPNB1AK53 854 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 GCOM1H8Y6P7 765 aaPredicted RBP6.08□□□□□ -1.44
COL17A1-206ENST00000483876 RAD21O60216 631 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 ICAM1P05362 532 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 POLR2MP0CAP2 368 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 BMP6P22004 513 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 SREBF1P36956 1147 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 PPP1R2P41236 205 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 ZNF75DP51815 510 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 BACE1P56817 501 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 MYL5Q02045 173 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 TCF15Q12870 199 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 NCAPHQ15003 741 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 SHROOM1Q2M3G4 852 aaPredicted RBP6.08□□□□□ -1.44
COL17A1-206ENST00000483876 DPCR1Q3MIW9 517 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 NAALADL2Q58DX5 795 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 NOL9Q5SY16 702 aaKnown RBP6.08□□□□□ -1.44
COL17A1-206ENST00000483876 HYIQ5T013 277 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 FAM83BQ5T0W9 1011 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 IER5LQ5T953 404 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 DGLUCYQ7Z3D6 616 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 MCF2L2Q86YR7 1114 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 SCYL3Q8IZE3 742 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 PDILTQ8N807 584 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 DHX58Q96C10 678 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 CALML4Q96GE6 196 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 C12orf42Q96LP6 360 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 C7orf25Q9BPX7 421 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 TRIM5Q9C035 493 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 EHMT1Q9H9B1 1298 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 KCNMB3Q9NPA1 279 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 TMEM260Q9NX78 707 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 STK17AQ9UEE5 414 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 LRWD1Q9UFC0 647 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 DDX25Q9UHL0 483 aaKnown RBP6.08□□□□□ -1.44
COL17A1-206ENST00000483876 MAN1B1Q9UKM7 699 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 PCDHA12Q9UN75 941 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 ADAMTS5Q9UNA0 930 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 SNCAIPQ9Y6H5 919 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 LTBP2Q14767 1821 aa6.08□□□□□ -1.44
COL17A1-206ENST00000483876 PVALEFA0A1B0GWK0 134 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 SOWAHBA6NEL2 793 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 GRXCR1A8MXD5 290 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 USP17L15C9J2P7 530 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 USP17L13C9JLJ4 530 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 USP17L11C9JVI0 530 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 USP17L18D6R9N7 530 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 USP17L22D6RA61 530 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 USP17L17D6RBQ6 530 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 USP17L19D6RCP7 530 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 USP17L20D6RJB6 530 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 OPLAHO14841 1288 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 ATP2A1O14983 1001 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 AP5Z1O43299 807 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 PRKAR2AP13861 404 aaKnown RBP6.07□□□□□ -1.44
COL17A1-206ENST00000483876 PTPRAP18433 802 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 MUTP22033 750 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 STAT6P42226 847 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 TECP42680 631 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 TXKP42681 527 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 OAZ1P54368 228 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 ARHGAP4P98171 946 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 USP17L24Q0WX57 530 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 IKQ13123 557 aaPredicted RBP6.07□□□□□ -1.44
COL17A1-206ENST00000483876 COBLL1Q53SF7 1204 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 KIAA1755Q5JYT7 1200 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 ZNF658Q5TYW1 1059 aaPredicted RBP6.07□□□□□ -1.44
COL17A1-206ENST00000483876 KRT79Q5XKE5 535 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 LHX8Q68G74 356 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 FOXR2Q6PJQ5 311 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 USP17L6PQ6QN14 398 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 CABP7Q86V35 215 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 SPICE1Q8N0Z3 855 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 ZNF280CQ8ND82 737 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 HAS1Q92839 578 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 ATOH1Q92858 354 aaPredicted RBP6.07□□□□□ -1.44
COL17A1-206ENST00000483876 ERCC4Q92889 916 aaPredicted RBP6.07□□□□□ -1.44
COL17A1-206ENST00000483876 CCDC47Q96A33 483 aaKnown RBP6.07□□□□□ -1.44
COL17A1-206ENST00000483876 NUP88Q99567 741 aaPredicted RBP6.07□□□□□ -1.44
COL17A1-206ENST00000483876 MTRQ99707 1265 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 SLF1Q9BQI6 1058 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 MMTAG2Q9BU76 263 aaKnown RBP6.07□□□□□ -1.44
COL17A1-206ENST00000483876 ANO3Q9BYT9 981 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 NT5C3AQ9H0P0 336 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 TTC12Q9H892 705 aaPredicted RBP6.07□□□□□ -1.44
COL17A1-206ENST00000483876 SLC28A3Q9HAS3 691 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 PICK1Q9NRD5 415 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 EMILIN3Q9NT22 766 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 HOXC10Q9NYD6 342 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 IMPACTQ9P2X3 320 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 MSRAQ9UJ68 235 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 TRPC6Q9Y210 931 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 ZKSCAN5Q9Y2L8 839 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 CHD6Q8TD26 2715 aa6.07□□□□□ -1.44
COL17A1-206ENST00000483876 OTOFQ9HC10 1997 aa6.06□□□□□ -1.44
COL17A1-206ENST00000483876 DCHS1Q96JQ0 3298 aa6.06□□□□□ -1.44
COL17A1-206ENST00000483876 POTEB3A0JP26 581 aa6.06□□□□□ -1.44
COL17A1-206ENST00000483876 TRIM43BA6NCK2 446 aa6.06□□□□□ -1.44
COL17A1-206ENST00000483876 PPP1R3GB7ZBB8 358 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms