RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 EPC1Q9H2F5 836 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 TAF1DQ9H5J8 278 aaPredicted RBP9.65□□□□□ -0.86
COL6A3-210ENST00000473258 ANTXR1Q9H6X2 564 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 NLRC4Q9NPP4 1024 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 LRCH1Q9Y2L9 728 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 CCDC162PA2VCL2 907 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 PRR23AA6NEV1 266 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 CASP14P31944 242 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 KRT17Q04695 432 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 NR1H3Q13133 447 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 MORC3Q14149 939 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 RGS21Q2M5E4 152 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 RTL3Q8N8U3 475 aaKnown RBP9.65□□□□□ -0.86
COL6A3-210ENST00000473258 NELFBQ8WX92 580 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 EHMT1Q9H9B1 1298 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 CHMP1AQ9HD42 196 aaPredicted RBP9.65□□□□□ -0.86
COL6A3-210ENST00000473258 CORO1CQ9ULV4 474 aaPredicted RBP9.65□□□□□ -0.86
COL6A3-210ENST00000473258 PLEKHG2Q9H7P9 1386 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 TOM1L1O75674 476 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 H2AFZP0C0S5 128 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 HSPA6P17066 643 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 PTK2BQ14289 1009 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 P3H1Q32P28 736 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 CWF19L1Q69YN2 538 aaKnown RBP9.65□□□□□ -0.86
COL6A3-210ENST00000473258 ADALQ6DHV7 355 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 H2AFVQ71UI9 128 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 ANKRD13CQ8N6S4 541 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 CDKL2Q92772 493 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 EME1Q96AY2 570 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 MTERF3Q96E29 417 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 LLPHQ9BRT6 129 aaKnown RBP9.65□□□□□ -0.86
COL6A3-210ENST00000473258 BBS2Q9BXC9 721 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 KCNG1Q9UIX4 513 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 MOSPD1Q9UJG1 213 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 SPATA2Q9UM82 520 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 CECR2Q9BXF3 1484 aa9.65□□□□□ -0.86
COL6A3-210ENST00000473258 APOL1O14791 398 aa9.65□□□□□ -0.87
COL6A3-210ENST00000473258 IMPDH2P12268 514 aa9.65□□□□□ -0.87
COL6A3-210ENST00000473258 MCM10Q7L590 875 aa9.65□□□□□ -0.87
COL6A3-210ENST00000473258 ZCCHC7Q8N3Z6 543 aaKnown RBP9.65□□□□□ -0.87
COL6A3-210ENST00000473258 KIF2BQ8N4N8 673 aa9.65□□□□□ -0.87
COL6A3-210ENST00000473258 MTBPQ96DY7 904 aa9.65□□□□□ -0.87
COL6A3-210ENST00000473258 DCTN4Q9UJW0 460 aa9.65□□□□□ -0.87
COL6A3-210ENST00000473258 STX7O15400 261 aaKnown RBP9.65□□□□□ -0.87
COL6A3-210ENST00000473258 GAS7O60861 476 aa9.65□□□□□ -0.87
COL6A3-210ENST00000473258 XRCC5P13010 732 aaKnown RBP9.65□□□□□ -0.87
COL6A3-210ENST00000473258 PSMA4P25789 261 aaKnown RBP9.65□□□□□ -0.87
COL6A3-210ENST00000473258 GCLCP48506 637 aaPredicted RBP9.65□□□□□ -0.87
COL6A3-210ENST00000473258 USP14P54578 494 aa9.65□□□□□ -0.87
COL6A3-210ENST00000473258 RINT1Q6NUQ1 792 aa9.65□□□□□ -0.87
COL6A3-210ENST00000473258 SH3BP5LQ7L8J4 393 aa9.65□□□□□ -0.87
COL6A3-210ENST00000473258 RNASE11Q8TAA1 199 aaKnown RBP9.65□□□□□ -0.87
COL6A3-210ENST00000473258 BTBD6Q96KE9 485 aa9.65□□□□□ -0.87
COL6A3-210ENST00000473258 KCNJ18B7U540 433 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 IKBKBO14920 756 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 ATP6V1G2O95670 118 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 PPARGP37231 505 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-210ENST00000473258 YWHAGP61981 247 aaKnown RBP eCLIP9.64□□□□□ -0.87
COL6A3-210ENST00000473258 KCNJ12Q14500 433 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 IRGCQ6NXR0 463 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 PBKQ96KB5 322 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 NDNQ99608 321 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 BHMT2Q9H2M3 363 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 MKNK2Q9HBH9 465 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 CADPSQ9ULU8 1353 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 FAM170AA1A519 330 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 HSPA1AP0DMV8 641 aaKnown RBP9.64□□□□□ -0.87
COL6A3-210ENST00000473258 HSPA1BP0DMV9 641 aaKnown RBP9.64□□□□□ -0.87
COL6A3-210ENST00000473258 NQO1P15559 274 aaKnown RBP9.64□□□□□ -0.87
COL6A3-210ENST00000473258 BFSP1Q12934 665 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 CADPS2Q86UW7 1296 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 GPIHBP1Q8IV16 184 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 TESK2Q96S53 571 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 PLIN2Q99541 437 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 HAUS7Q99871 368 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 KLC2Q9H0B6 622 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 DCLRE1BQ9H816 532 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 C12orf4Q9NQ89 552 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 COMMD3-BMI1R4GMX3 469 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 TNFRSF21O75509 655 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 CALML3P27482 149 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 U2AF1L4Q8WU68 220 aaKnown RBP9.64□□□□□ -0.87
COL6A3-210ENST00000473258 IARS2Q9NSE4 1012 aaKnown RBP9.64□□□□□ -0.87
COL6A3-210ENST00000473258 USP40Q9NVE5 1235 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 PITPNM2Q9BZ72 1349 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 KLHL33A6NCF5 533 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 PLA2G4AP47712 749 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 CCNHP51946 323 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-210ENST00000473258 EFR3AQ14156 821 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 ARMCX4Q5H9R4 360 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 CREB3L3Q68CJ9 461 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 LRRC49Q8IUZ0 686 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 STX19Q8N4C7 294 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 C19orf60Q96EN9 201 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 NARS2Q96I59 477 aaKnown RBP9.64□□□□□ -0.87
COL6A3-210ENST00000473258 OSBPL10Q9BXB5 764 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 COG4Q9H9E3 785 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 PHF8Q9UPP1 1060 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 TELO2Q9Y4R8 837 aa9.64□□□□□ -0.87
COL6A3-210ENST00000473258 VWA3AA6NCI4 1184 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms