RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 PICK1Q9NRD5 415 aa15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 GINS2Q9Y248 185 aa15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 PLSCR1O15162 318 aa15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 ONECUT3O60422 494 aaPredicted RBP15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 SLC9A1P19634 815 aa15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 GMPSP49915 693 aaPredicted RBP15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 NPEPPSP55786 919 aa15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 FKBP3Q00688 224 aaKnown RBP15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 C2orf54Q08AI8 447 aa15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 PDE4DIPQ5VU43 2346 aa15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 PDS5AQ29RF7 1337 aaKnown RBP15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 IRS2Q9Y4H2 1338 aa15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 K7ENM7 598 aa15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 MEIS2O14770 477 aa15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 GJC1P36383 396 aa15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 TNIP1Q15025 636 aa15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 PLA2G4FQ68DD2 849 aa15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 HS2ST1Q7LGA3 356 aa15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 SIAH1Q8IUQ4 282 aa15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 ANKS1AQ92625 1134 aa15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 WDR11Q9BZH6 1224 aa15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 CNOT7Q9UIV1 285 aaKnown RBP15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 EEF1GP26641 437 aaKnown RBP15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 XKR9Q5GH70 373 aa15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 CT47A1Q5JQC4 288 aaPredicted RBP15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 KLHL7Q8IXQ5 586 aa15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 LIMA1Q9UHB6 759 aaKnown RBP15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 ZNRF3Q9ULT6 936 aa15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 COL4A3BPQ9Y5P4 624 aa15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 MYH7P12883 1935 aa15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 EAPPQ56P03 285 aaPredicted RBP15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 ANGEL2Q5VTE6 544 aaKnown RBP15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 ARHGEF16Q5VV41 709 aa15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 SERPINA10Q9UK55 444 aa15.14■□□□□ 0.01
CCDC88A-211ENST00000471947 DUOX1Q9NRD9 1551 aa15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 DLATP10515 647 aaKnown RBP15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 KRT83P78385 493 aa15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 EHHADHQ08426 723 aa15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 LMBRD2Q68DH5 695 aaPredicted RBP15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 TMEM139Q8IV31 216 aa15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 NOA1Q8NC60 698 aaKnown RBP15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 SECISBP2LQ93073 1101 aaKnown RBP15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 NYAP2Q9P242 653 aa15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 GFPT2O94808 682 aa15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 XRCC5P13010 732 aaKnown RBP15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 KIAA0753Q2KHM9 967 aa15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 HSP90B2PQ58FF3 399 aa15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 SEPT14Q6ZU15 432 aa15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 DCAF4Q8WV16 495 aa15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 PANX2Q96RD6 677 aa15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 MYO6Q9UM54 1294 aa15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 CYP11B2P19099 503 aa15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 KRT222Q8N1A0 295 aa15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 TCHPQ9BT92 498 aa15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 MYOZ2Q9NPC6 264 aa15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 STK17AQ9UEE5 414 aa15.13■□□□□ 0.01
CCDC88A-211ENST00000471947 RCCD1A6NED2 376 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 IPO5O00410 1097 aaKnown RBP15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 KIF11P52732 1056 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 KCNH2Q12809 1159 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 HLTFQ14527 1009 aaKnown RBP eCLIP15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 MAN2A1Q16706 1144 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 RTKN2Q8IZC4 609 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 SPATA20Q8TB22 786 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 U2AF1L4Q8WU68 220 aaKnown RBP15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 ATG4CQ96DT6 458 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 MTMR9Q96QG7 549 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 DEFB129Q9H1M3 183 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 THAP9Q9H5L6 903 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 CLEC11AQ9Y240 323 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 PPP1R12BO60237 982 aaPredicted RBP15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 SFMBT2Q5VUG0 894 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 CYFIP1Q7L576 1253 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 IL31RAQ8NI17 732 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 TACC1O75410 805 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 PRPHP41219 470 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 ZNF746Q6NUN9 644 aaPredicted RBP15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 NFRKBQ6P4R8 1299 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 SLFN12Q8IYM2 578 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 DAGLBQ8NCG7 672 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 RMDN3Q96TC7 470 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 C7orf25Q9BPX7 421 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 LXNQ9BS40 222 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 LRRC27Q9C0I9 530 aa15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 MRPL11Q9Y3B7 192 aaKnown RBP15.12■□□□□ 0.01
CCDC88A-211ENST00000471947 EPB41P11171 864 aaKnown RBP15.11■□□□□ 0.01
CCDC88A-211ENST00000471947 TBX2Q13207 712 aaPredicted RBP15.11■□□□□ 0.01
CCDC88A-211ENST00000471947 DPH6Q7L8W6 267 aa15.11■□□□□ 0.01
CCDC88A-211ENST00000471947 MS4A14Q96JA4 679 aa15.11■□□□□ 0.01
CCDC88A-211ENST00000471947 TAAR1Q96RJ0 339 aa15.11■□□□□ 0.01
CCDC88A-211ENST00000471947 ESYT3A0FGR9 886 aa15.11■□□□□ 0.01
CCDC88A-211ENST00000471947 ASNSP08243 561 aa15.11■□□□□ 0.01
CCDC88A-211ENST00000471947 MARK3P27448 753 aa15.11■□□□□ 0.01
CCDC88A-211ENST00000471947 LMAN1P49257 510 aa15.11■□□□□ 0.01
CCDC88A-211ENST00000471947 PEX3P56589 373 aa15.11■□□□□ 0.01
CCDC88A-211ENST00000471947 C15orf52Q6ZUT6 534 aaKnown RBP15.11■□□□□ 0.01
CCDC88A-211ENST00000471947 APTXQ7Z2E3 356 aaKnown RBP15.11■□□□□ 0.01
CCDC88A-211ENST00000471947 RPAP3Q9H6T3 665 aaPredicted RBP15.11■□□□□ 0.01
CCDC88A-211ENST00000471947 SAR1BQ9Y6B6 198 aa15.11■□□□□ 0.01
CCDC88A-211ENST00000471947 M0R2N6 131 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms