RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 TMEM39AQ9NV64 488 aa13.23□□□□□ -0.29
CUX1-207ENST00000465461 HDAC6Q9UBN7 1215 aa13.23□□□□□ -0.29
CUX1-207ENST00000465461 DDX25Q9UHL0 483 aaKnown RBP13.23□□□□□ -0.29
CUX1-207ENST00000465461 SCN10AQ9Y5Y9 1956 aa13.22□□□□□ -0.29
CUX1-207ENST00000465461 CYP3A7-CYP3A51PA0A087WV96 503 aa13.22□□□□□ -0.29
CUX1-207ENST00000465461 H3BRB1 525 aa13.22□□□□□ -0.29
CUX1-207ENST00000465461 K7ELQ4 463 aaPredicted RBP13.22□□□□□ -0.29
CUX1-207ENST00000465461 HAS3O00219 553 aa13.22□□□□□ -0.29
CUX1-207ENST00000465461 F2P00734 622 aa13.22□□□□□ -0.29
CUX1-207ENST00000465461 CD4P01730 458 aa13.22□□□□□ -0.29
CUX1-207ENST00000465461 CYP2C9P11712 490 aa13.22□□□□□ -0.29
CUX1-207ENST00000465461 CYP3A7P24462 503 aa13.22□□□□□ -0.29
CUX1-207ENST00000465461 MARK3P27448 753 aa13.22□□□□□ -0.29
CUX1-207ENST00000465461 SETQ01105 290 aaPredicted RBP13.22□□□□□ -0.29
CUX1-207ENST00000465461 SAFBQ15424 915 aaKnown RBP eCLIP13.22□□□□□ -0.29
CUX1-207ENST00000465461 Q4G0T1 1027 aa13.22□□□□□ -0.29
CUX1-207ENST00000465461 GDF6Q6KF10 455 aaPredicted RBP13.22□□□□□ -0.29
CUX1-207ENST00000465461 RNPEPQ9H4A4 650 aa13.22□□□□□ -0.29
CUX1-207ENST00000465461 TUT1Q9H6E5 874 aaKnown RBP13.22□□□□□ -0.29
CUX1-207ENST00000465461 PDE4DIPQ5VU43 2346 aa13.22□□□□□ -0.29
CUX1-207ENST00000465461 UMODL1Q5DID0 1318 aa13.21□□□□□ -0.29
CUX1-207ENST00000465461 CHMP2AO43633 222 aa13.21□□□□□ -0.29
CUX1-207ENST00000465461 C7orf31Q8N865 590 aa13.21□□□□□ -0.29
CUX1-207ENST00000465461 SLC5A5Q92911 643 aa13.21□□□□□ -0.29
CUX1-207ENST00000465461 BADQ92934 168 aa13.21□□□□□ -0.29
CUX1-207ENST00000465461 MBOAT7Q96N66 472 aa13.21□□□□□ -0.29
CUX1-207ENST00000465461 TOX2Q96NM4 488 aa13.21□□□□□ -0.29
CUX1-207ENST00000465461 PPP1R12CQ9BZL4 782 aa13.21□□□□□ -0.29
CUX1-207ENST00000465461 PRKAG2Q9UGJ0 569 aa13.21□□□□□ -0.29
CUX1-207ENST00000465461 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.21□□□□□ -0.29
CUX1-207ENST00000465461 MROH7Q68CQ1 1323 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 TLR3O15455 904 aaKnown RBP13.2□□□□□ -0.3
CUX1-207ENST00000465461 GAS7O60861 476 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 SMIM10L2AP0DMW4 78 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 SMIM10L2BP0DMW5 78 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 MAGEA10P43363 369 aaPredicted RBP13.2□□□□□ -0.3
CUX1-207ENST00000465461 GNL2Q13823 731 aaKnown RBP13.2□□□□□ -0.3
CUX1-207ENST00000465461 NBR1Q14596 966 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 PTGISQ16647 500 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 PRPF38BQ5VTL8 546 aaKnown RBP13.2□□□□□ -0.3
CUX1-207ENST00000465461 LRCH2Q5VUJ6 765 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 MCTP1Q6DN14 999 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 PPP4R3AQ6IN85 833 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 NFRKBQ6P4R8 1299 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 MOXD1Q6UVY6 613 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 ABHD15Q6UXT9 468 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 CHRDL2Q6WN34 429 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 TRMT1LQ7Z2T5 733 aaKnown RBP13.2□□□□□ -0.3
CUX1-207ENST00000465461 SPRYD3Q8NCJ5 442 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 ETNPPLQ8TBG4 499 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 GLG1Q92896 1179 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 SNX21Q969T3 373 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 CTAGE1Q96RT6 745 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 KATNAL1Q9BW62 490 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 FOXP1Q9H334 677 aaPredicted RBP13.2□□□□□ -0.3
CUX1-207ENST00000465461 UNC45AQ9H3U1 944 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 TBC1D22BQ9NU19 505 aa13.2□□□□□ -0.3
CUX1-207ENST00000465461 H3BQV1 296 aa13.19□□□□□ -0.3
CUX1-207ENST00000465461 KIAA0355O15063 1070 aa13.19□□□□□ -0.3
CUX1-207ENST00000465461 LGR5O75473 907 aa13.19□□□□□ -0.3
CUX1-207ENST00000465461 PSMD10O75832 226 aa13.19□□□□□ -0.3
CUX1-207ENST00000465461 ATG7O95352 703 aa13.19□□□□□ -0.3
CUX1-207ENST00000465461 SUPT20HL2P0C7V6 817 aa13.19□□□□□ -0.3
CUX1-207ENST00000465461 RAG1P15918 1043 aa13.19□□□□□ -0.3
CUX1-207ENST00000465461 CYP2C18P33260 490 aa13.19□□□□□ -0.3
CUX1-207ENST00000465461 ZNF174Q15697 407 aa13.19□□□□□ -0.3
CUX1-207ENST00000465461 LARP1BQ659C4 914 aaKnown RBP13.19□□□□□ -0.3
CUX1-207ENST00000465461 SWSAP1Q6NVH7 229 aa13.19□□□□□ -0.3
CUX1-207ENST00000465461 CCDC60Q8IWA6 550 aaPredicted RBP13.19□□□□□ -0.3
CUX1-207ENST00000465461 HSCBQ8IWL3 235 aa13.19□□□□□ -0.3
CUX1-207ENST00000465461 HAS1Q92839 578 aa13.19□□□□□ -0.3
CUX1-207ENST00000465461 ZBTB10Q96DT7 871 aa13.19□□□□□ -0.3
CUX1-207ENST00000465461 TEKT3Q9BXF9 490 aa13.19□□□□□ -0.3
CUX1-207ENST00000465461 SETD4Q9NVD3 440 aa13.19□□□□□ -0.3
CUX1-207ENST00000465461 GTF2IRD1Q9UHL9 959 aa13.19□□□□□ -0.3
CUX1-207ENST00000465461 TBX21Q9UL17 535 aa13.19□□□□□ -0.3
CUX1-207ENST00000465461 COLQQ9Y215 455 aaPredicted RBP13.19□□□□□ -0.3
CUX1-207ENST00000465461 SAMM50Q9Y512 469 aa13.19□□□□□ -0.3
CUX1-207ENST00000465461 BACH1O14867 736 aa13.18□□□□□ -0.3
CUX1-207ENST00000465461 MARCH6O60337 910 aa13.18□□□□□ -0.3
CUX1-207ENST00000465461 MCM7P33993 719 aa13.18□□□□□ -0.3
CUX1-207ENST00000465461 STAT5BP51692 787 aa13.18□□□□□ -0.3
CUX1-207ENST00000465461 CCL23P55773 120 aa13.18□□□□□ -0.3
CUX1-207ENST00000465461 ZNF746Q6NUN9 644 aaPredicted RBP13.18□□□□□ -0.3
CUX1-207ENST00000465461 MIS18BP1Q6P0N0 1132 aa13.18□□□□□ -0.3
CUX1-207ENST00000465461 SESTD1Q86VW0 696 aa13.18□□□□□ -0.3
CUX1-207ENST00000465461 NOSTRINQ8IVI9 506 aa13.18□□□□□ -0.3
CUX1-207ENST00000465461 DHX38Q92620 1227 aaKnown RBP13.18□□□□□ -0.3
CUX1-207ENST00000465461 WNT8BQ93098 351 aa13.18□□□□□ -0.3
CUX1-207ENST00000465461 RIT2Q99578 217 aa13.18□□□□□ -0.3
CUX1-207ENST00000465461 TMEM60Q9H2L4 133 aa13.18□□□□□ -0.3
CUX1-207ENST00000465461 SMARCAD1Q9H4L7 1026 aa13.18□□□□□ -0.3
CUX1-207ENST00000465461 AZI2Q9H6S1 392 aa13.18□□□□□ -0.3
CUX1-207ENST00000465461 KCNMB3Q9NPA1 279 aa13.18□□□□□ -0.3
CUX1-207ENST00000465461 ZNF302Q9NR11 478 aa13.18□□□□□ -0.3
CUX1-207ENST00000465461 GABBR1Q9UBS5 961 aa13.18□□□□□ -0.3
CUX1-207ENST00000465461 ZNF215Q9UL58 517 aaPredicted RBP13.18□□□□□ -0.3
CUX1-207ENST00000465461 NOD1Q9Y239 953 aa13.18□□□□□ -0.3
CUX1-207ENST00000465461 KIF3AQ9Y496 699 aa13.18□□□□□ -0.3
CUX1-207ENST00000465461 EMSYQ7Z589 1322 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms