RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 AK8Q96MA6 479 aa13.32□□□□□ -0.28
USP54-209ENST00000464635 TOX2Q96NM4 488 aa13.32□□□□□ -0.28
USP54-209ENST00000464635 TSPY26PQ9H489 355 aa13.32□□□□□ -0.28
USP54-209ENST00000464635 VAT1LQ9HCJ6 419 aa13.32□□□□□ -0.28
USP54-209ENST00000464635 VTA1Q9NP79 307 aa13.32□□□□□ -0.28
USP54-209ENST00000464635 HOOK1Q9UJC3 728 aaKnown RBP13.32□□□□□ -0.28
USP54-209ENST00000464635 A0A0U1RQG5 324 aaPredicted RBP13.31□□□□□ -0.28
USP54-209ENST00000464635 DCDC2CA8MYV0 355 aa13.31□□□□□ -0.28
USP54-209ENST00000464635 ARVCFO00192 962 aa13.31□□□□□ -0.28
USP54-209ENST00000464635 DYNC1LI2O43237 492 aaPredicted RBP13.31□□□□□ -0.28
USP54-209ENST00000464635 SLC26A4O43511 780 aa13.31□□□□□ -0.28
USP54-209ENST00000464635 SYKP43405 635 aa13.31□□□□□ -0.28
USP54-209ENST00000464635 GHRHRQ02643 423 aa13.31□□□□□ -0.28
USP54-209ENST00000464635 SHC4Q6S5L8 630 aa13.31□□□□□ -0.28
USP54-209ENST00000464635 RNF207Q6ZRF8 634 aa13.31□□□□□ -0.28
USP54-209ENST00000464635 FBXO11Q86XK2 927 aa13.31□□□□□ -0.28
USP54-209ENST00000464635 HOMER1Q86YM7 354 aa13.31□□□□□ -0.28
USP54-209ENST00000464635 FAM126BQ8IXS8 530 aa13.31□□□□□ -0.28
USP54-209ENST00000464635 PSTPIP2Q9H939 334 aa13.31□□□□□ -0.28
USP54-209ENST00000464635 PCDHA1Q9Y5I3 950 aa13.31□□□□□ -0.28
USP54-209ENST00000464635 GRIN2DO15399 1336 aa13.31□□□□□ -0.28
USP54-209ENST00000464635 SCN10AQ9Y5Y9 1956 aa13.31□□□□□ -0.28
USP54-209ENST00000464635 PFKFB1P16118 471 aa13.3□□□□□ -0.28
USP54-209ENST00000464635 MARCKSP29966 332 aaPredicted RBP13.3□□□□□ -0.28
USP54-209ENST00000464635 NDUFA8P51970 172 aa13.3□□□□□ -0.28
USP54-209ENST00000464635 PSMC6P62333 389 aa13.3□□□□□ -0.28
USP54-209ENST00000464635 PTGDRQ13258 359 aa13.3□□□□□ -0.28
USP54-209ENST00000464635 IQSEC1Q6DN90 963 aa13.3□□□□□ -0.28
USP54-209ENST00000464635 TBC1D5Q92609 795 aa13.3□□□□□ -0.28
USP54-209ENST00000464635 FAM161BQ96MY7 647 aa13.3□□□□□ -0.28
USP54-209ENST00000464635 AP5M1Q9H0R1 490 aa13.3□□□□□ -0.28
USP54-209ENST00000464635 GOLPH3LQ9H4A5 285 aa13.3□□□□□ -0.28
USP54-209ENST00000464635 COL20A1Q9P218 1284 aa13.3□□□□□ -0.28
USP54-209ENST00000464635 ADD3Q9UEY8 706 aaKnown RBP13.3□□□□□ -0.28
USP54-209ENST00000464635 KCNH3Q9ULD8 1083 aa13.3□□□□□ -0.28
USP54-209ENST00000464635 SCN5AQ14524 2016 aa13.29□□□□□ -0.28
USP54-209ENST00000464635 CYP3A7-CYP3A51PA0A087WV96 503 aa13.29□□□□□ -0.28
USP54-209ENST00000464635 A0A1B0GVL5 298 aa13.29□□□□□ -0.28
USP54-209ENST00000464635 PPP1R11O60927 126 aaPredicted RBP13.29□□□□□ -0.28
USP54-209ENST00000464635 CYP3A7P24462 503 aa13.29□□□□□ -0.28
USP54-209ENST00000464635 EDNRBP24530 442 aa13.29□□□□□ -0.28
USP54-209ENST00000464635 FPGSQ05932 587 aa13.29□□□□□ -0.28
USP54-209ENST00000464635 PDIA5Q14554 519 aa13.29□□□□□ -0.28
USP54-209ENST00000464635 DUSP28Q4G0W2 176 aa13.29□□□□□ -0.28
USP54-209ENST00000464635 CT47A1Q5JQC4 288 aaPredicted RBP13.29□□□□□ -0.28
USP54-209ENST00000464635 SLC43A3Q8NBI5 491 aa13.29□□□□□ -0.28
USP54-209ENST00000464635 RNPC3Q96LT9 517 aaKnown RBP13.29□□□□□ -0.28
USP54-209ENST00000464635 GUCD1Q96NT3 240 aa13.29□□□□□ -0.28
USP54-209ENST00000464635 SDF4Q9BRK5 362 aa13.29□□□□□ -0.28
USP54-209ENST00000464635 PPP1R12CQ9BZL4 782 aa13.29□□□□□ -0.28
USP54-209ENST00000464635 MRPL11Q9Y3B7 192 aaKnown RBP13.29□□□□□ -0.28
USP54-209ENST00000464635 MROH7Q68CQ1 1323 aa13.29□□□□□ -0.28
USP54-209ENST00000464635 TANC1Q9C0D5 1861 aa13.29□□□□□ -0.28
USP54-209ENST00000464635 MYH7BA7E2Y1 1941 aa13.29□□□□□ -0.28
USP54-209ENST00000464635 RBM47A0AV96 593 aaKnown RBP13.28□□□□□ -0.28
USP54-209ENST00000464635 TIMP1P01033 207 aa13.28□□□□□ -0.28
USP54-209ENST00000464635 CD4P01730 458 aa13.28□□□□□ -0.28
USP54-209ENST00000464635 MYL1P05976 194 aa13.28□□□□□ -0.28
USP54-209ENST00000464635 PDE4DQ08499 809 aa13.28□□□□□ -0.28
USP54-209ENST00000464635 SASS6Q6UVJ0 657 aa13.28□□□□□ -0.28
USP54-209ENST00000464635 KCTD17Q8N5Z5 321 aa13.28□□□□□ -0.28
USP54-209ENST00000464635 CRYGNQ8WXF5 182 aa13.28□□□□□ -0.28
USP54-209ENST00000464635 PIBF1Q8WXW3 757 aa13.28□□□□□ -0.28
USP54-209ENST00000464635 COPS5Q92905 334 aa13.28□□□□□ -0.28
USP54-209ENST00000464635 MBOAT7Q96N66 472 aa13.28□□□□□ -0.28
USP54-209ENST00000464635 WDR11Q9BZH6 1224 aa13.28□□□□□ -0.28
USP54-209ENST00000464635 CCSER1Q9C0I3 900 aa13.28□□□□□ -0.28
USP54-209ENST00000464635 KIAA1468Q9P260 1216 aa13.28□□□□□ -0.28
USP54-209ENST00000464635 TUBE1Q9UJT0 475 aa13.28□□□□□ -0.28
USP54-209ENST00000464635 STXBP5LQ9Y2K9 1186 aa13.28□□□□□ -0.28
USP54-209ENST00000464635 STK24Q9Y6E0 443 aa13.28□□□□□ -0.28
USP54-209ENST00000464635 ABCB11O95342 1321 aa13.28□□□□□ -0.28
USP54-209ENST00000464635 UMODL1Q5DID0 1318 aa13.28□□□□□ -0.28
USP54-209ENST00000464635 LOC102724159A0A0B4J2E5 919 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 MEIS2O14770 477 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 TBX3O15119 743 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 ARIH2O95376 493 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 CYP3A4P08684 503 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 XRCC6P12956 609 aaKnown RBP eCLIP13.27□□□□□ -0.29
USP54-209ENST00000464635 CIITAP33076 1130 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 CYP2C18P33260 490 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 ITGA7Q13683 1181 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 PWP2Q15269 919 aaKnown RBP13.27□□□□□ -0.29
USP54-209ENST00000464635 ZNF174Q15697 407 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 INF2Q27J81 1249 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 NT5DC1Q5TFE4 455 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 FAM109BQ6ICB4 259 aaPredicted RBP13.27□□□□□ -0.29
USP54-209ENST00000464635 DTHD1Q6ZMT9 781 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 KRBA2Q6ZNG9 492 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 DNERQ8NFT8 737 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 SYTL5Q8TDW5 730 aaPredicted RBP13.27□□□□□ -0.29
USP54-209ENST00000464635 TBCKQ8TEA7 893 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 PPP1R13LQ8WUF5 828 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 TAAR1Q96RJ0 339 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.27□□□□□ -0.29
USP54-209ENST00000464635 RAB34Q9BZG1 259 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 TRPV6Q9H1D0 765 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 CUEDC2Q9H467 287 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 MAGEF1Q9HAY2 307 aa13.27□□□□□ -0.29
USP54-209ENST00000464635 ANO10Q9NW15 660 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms