RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 PIK3CDO00329 1044 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 ECDO95905 644 aaPredicted RBP9.58□□□□□ -0.88
NIPBL-202ENST00000448238 ABCB4P21439 1286 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 NLRP12P59046 1061 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 KIF22Q14807 665 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 TAB1Q15750 504 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 CENPUQ71F23 418 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 TAF8Q7Z7C8 310 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 PACSIN1Q9BY11 444 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 DNALI1O14645 258 aaPredicted RBP9.58□□□□□ -0.88
NIPBL-202ENST00000448238 PEX1O43933 1283 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 SMARCA5O60264 1052 aaPredicted RBP9.58□□□□□ -0.88
NIPBL-202ENST00000448238 APOA4P06727 396 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 ATP2B4P23634 1241 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 ZNF544Q6NX49 715 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 C19orf18Q8NEA5 215 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 COG1Q8WTW3 980 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 MRPL47Q9HD33 250 aaKnown RBP9.58□□□□□ -0.88
NIPBL-202ENST00000448238 POTECB2RU33 542 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 PSMC3P17980 439 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 TMOD1P28289 359 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 ARL4AP40617 200 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 TMPOP42166 694 aaKnown RBP9.58□□□□□ -0.88
NIPBL-202ENST00000448238 CCT8P50990 548 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 MAPRE1Q15691 268 aaKnown RBP9.58□□□□□ -0.88
NIPBL-202ENST00000448238 CAPN12Q6ZSI9 719 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 NEK10Q6ZWH5 1172 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 EML4Q9HC35 981 aaKnown RBP9.58□□□□□ -0.88
NIPBL-202ENST00000448238 CCDC22O60826 627 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 CA4P22748 312 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 PURAQ00577 322 aaKnown RBP9.58□□□□□ -0.88
NIPBL-202ENST00000448238 RGS9BPQ6ZS82 235 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 TBC1D1Q86TI0 1168 aaPredicted RBP9.58□□□□□ -0.88
NIPBL-202ENST00000448238 TTC6Q86TZ1 520 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 U2AF1L4Q8WU68 220 aaKnown RBP9.58□□□□□ -0.88
NIPBL-202ENST00000448238 KRCC1Q9NPI7 259 aaPredicted RBP9.58□□□□□ -0.88
NIPBL-202ENST00000448238 FIS1Q9Y3D6 152 aa9.58□□□□□ -0.88
NIPBL-202ENST00000448238 RBM8AQ9Y5S9 174 aaKnown RBP9.58□□□□□ -0.88
NIPBL-202ENST00000448238 EPHB1P54762 984 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 NUP107P57740 925 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 NELFBQ8WX92 580 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 CALR3Q96L12 384 aaKnown RBP9.57□□□□□ -0.88
NIPBL-202ENST00000448238 FAM129AQ9BZQ8 928 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 SMYD3Q9H7B4 428 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 TRPC7Q9HCX4 862 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 PARVAQ9NVD7 372 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 GALNT8Q9NY28 637 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 PIK3R2O00459 728 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 MSR1P21757 451 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 IL12RB1P42701 662 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 PPARGC1AQ9UBK2 798 aaKnown RBP9.57□□□□□ -0.88
NIPBL-202ENST00000448238 TRIM49P0CI25 452 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 TRIM49CP0CI26 452 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 EIF2S3P41091 472 aaKnown RBP9.57□□□□□ -0.88
NIPBL-202ENST00000448238 BTN3A2P78410 334 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 PSMD2Q13200 908 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 TMED2Q15363 201 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 SRLQ86TD4 932 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 RASSF3Q86WH2 238 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 MMS19Q96T76 1030 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 NFE2L3Q9Y4A8 694 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 PIK3R4Q99570 1358 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 RB1CC1Q8TDY2 1594 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 KRT38O76015 456 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 PDE9AO76083 593 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 NCF4Q15080 339 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 ADCK5Q3MIX3 580 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 USP39Q53GS9 565 aaKnown RBP9.57□□□□□ -0.88
NIPBL-202ENST00000448238 KCTD16Q68DU8 428 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 PBKQ96KB5 322 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 GCNAQ96QF7 691 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 DENND2AQ9ULE3 1009 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 CLEC11AQ9Y240 323 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 NR1D1P20393 614 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 CYP4A11Q02928 519 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 ARL13BQ3SXY8 428 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 CYP4A22Q5TCH4 519 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 GOLPH3LQ9H4A5 285 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 STK17AQ9UEE5 414 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 DAPK1P53355 1430 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 KDM2BQ8NHM5 1336 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 SMIM31A0A1B0GVY4 71 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 TBKBP1A7MCY6 615 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 STRNO43815 780 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 TGFBR2P37173 567 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 SHROOM1Q2M3G4 852 aaPredicted RBP9.57□□□□□ -0.88
NIPBL-202ENST00000448238 EFHBQ8N7U6 833 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 SLC7A5P2Q9GIP4 190 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 POLKQ9UBT6 870 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 ARMCX3Q9UH62 379 aaPredicted RBP9.57□□□□□ -0.88
NIPBL-202ENST00000448238 DLGAP3O95886 979 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 MAPKAPK2P49137 400 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 DMP1Q13316 513 aaPredicted RBP9.57□□□□□ -0.88
NIPBL-202ENST00000448238 SGO2Q562F6 1265 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 LCMT1Q9UIC8 334 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 PTPN22Q9Y2R2 807 aa9.57□□□□□ -0.88
NIPBL-202ENST00000448238 ZNF202O95125 648 aa9.56□□□□□ -0.88
NIPBL-202ENST00000448238 COPS2P61201 443 aa9.56□□□□□ -0.88
NIPBL-202ENST00000448238 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.56□□□□□ -0.884e-9■□□□□ 9.6
NIPBL-202ENST00000448238 TTC8Q8TAM2 541 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms