RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 POTEAQ6S8J7 498 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 TPTE2Q6XPS3 522 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 FRMD5Q7Z6J6 570 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 CROCCP2Q86T23 111 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 CCDC50Q8IVM0 306 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 SETDB2Q96T68 719 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 NCAPGQ9BPX3 1015 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 PLEKHA4Q9H4M7 779 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 TMBIM4Q9HC24 238 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 PANK4Q9NVE7 773 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 TFCP2L1Q9NZI6 479 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 KIF13BQ9NQT8 1826 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 MYH14Q7Z406 1995 aaKnown RBP12.08□□□□□ -0.47
LIMS1-207ENST00000422797 SPATA31A1Q5TZJ5 1347 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 AHDC1Q5TGY3 1603 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-207ENST00000422797 H0YHG0 523 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 PGRMC1O00264 195 aaKnown RBP12.08□□□□□ -0.48
LIMS1-207ENST00000422797 BUB1O43683 1085 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 NOL4O94818 638 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 KIF4AO95239 1232 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 KLRK1P26718 216 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 CXCR5P32302 372 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 PRKCIP41743 596 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 MRPL12P52815 198 aaKnown RBP12.08□□□□□ -0.48
LIMS1-207ENST00000422797 EIF3BP55884 814 aaKnown RBP12.08□□□□□ -0.48
LIMS1-207ENST00000422797 POLR2FP61218 127 aaKnown RBP12.08□□□□□ -0.48
LIMS1-207ENST00000422797 RAPGEF1Q13905 1077 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 NAA35Q5VZE5 725 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 DYMQ7RTS9 669 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 MAATS1Q7Z4T9 603 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 NLRP14Q86W24 1093 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 NBPF5PQ86XG9 351 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-207ENST00000422797 CCDC26Q8TAB7 109 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 ZNF473Q8WTR7 871 aaKnown RBP12.08□□□□□ -0.48
LIMS1-207ENST00000422797 TGFBRAP1Q8WUH2 860 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 CASKIN2Q8WXE0 1202 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 IFT81Q8WYA0 676 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 DNAJC19Q96DA6 116 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 FAM163AQ96GL9 167 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-207ENST00000422797 PIGSQ96S52 555 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 MYCBPQ99417 103 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-207ENST00000422797 KRT12Q99456 494 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 GANQ9H2C0 597 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 CNOT10Q9H9A5 744 aaKnown RBP12.08□□□□□ -0.48
LIMS1-207ENST00000422797 METTL14Q9HCE5 456 aaKnown RBP12.08□□□□□ -0.48
LIMS1-207ENST00000422797 FAM114A2Q9NRY5 505 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 NARFQ9UHQ1 456 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 SALL4Q9UJQ4 1053 aa12.08□□□□□ -0.48
LIMS1-207ENST00000422797 GPR75-ASB3A0A0A6YYF3 556 aa12.07□□□□□ -0.48
LIMS1-207ENST00000422797 PNMA6FA0A0J9YX94 578 aa12.07□□□□□ -0.48
LIMS1-207ENST00000422797 FRMD3A2A2Y4 597 aa12.07□□□□□ -0.48
LIMS1-207ENST00000422797 SLC16A3O15427 465 aaKnown RBP12.07□□□□□ -0.48
LIMS1-207ENST00000422797 MARCH6O60337 910 aa12.07□□□□□ -0.48
LIMS1-207ENST00000422797 TLR2O60603 784 aa12.07□□□□□ -0.48
LIMS1-207ENST00000422797 PAEPP09466 180 aa12.07□□□□□ -0.48
LIMS1-207ENST00000422797 SNHG28P0DPA3 235 aa12.07□□□□□ -0.48
LIMS1-207ENST00000422797 HNRNPH1P31943 449 aaKnown RBP12.07□□□□□ -0.48
LIMS1-207ENST00000422797 ITGB3BPQ13352 177 aaPredicted RBP12.07□□□□□ -0.48
LIMS1-207ENST00000422797 MOXD1Q6UVY6 613 aa12.07□□□□□ -0.48
LIMS1-207ENST00000422797 SCFD2Q8WU76 684 aa12.07□□□□□ -0.48
LIMS1-207ENST00000422797 PIK3R5Q8WYR1 880 aa12.07□□□□□ -0.48
LIMS1-207ENST00000422797 TBC1D5Q92609 795 aa12.07□□□□□ -0.48
LIMS1-207ENST00000422797 CUL5Q93034 780 aa12.07□□□□□ -0.48
LIMS1-207ENST00000422797 RNPC3Q96LT9 517 aaKnown RBP12.07□□□□□ -0.48
LIMS1-207ENST00000422797 NAP1L3Q99457 506 aaPredicted RBP12.07□□□□□ -0.48
LIMS1-207ENST00000422797 RTFDC1Q9BY42 306 aaPredicted RBP12.07□□□□□ -0.48
LIMS1-207ENST00000422797 BIN2Q9UBW5 565 aaPredicted RBP12.07□□□□□ -0.48
LIMS1-207ENST00000422797 DDX25Q9UHL0 483 aaKnown RBP12.07□□□□□ -0.48
LIMS1-207ENST00000422797 TTC7AQ9ULT0 858 aaPredicted RBP12.07□□□□□ -0.48
LIMS1-207ENST00000422797 PLAAQ9Y263 795 aa12.07□□□□□ -0.48
LIMS1-207ENST00000422797 NRAPQ86VF7 1730 aa12.07□□□□□ -0.48
LIMS1-207ENST00000422797 GTPBP10A4D1E9 387 aaKnown RBP12.06□□□□□ -0.48
LIMS1-207ENST00000422797 TRIM37O94972 964 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 KLRC1P26715 233 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 GBP1P32455 592 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 FNTAP49354 379 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 SMTNP53814 917 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 BARGINQ6ZT62 677 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 TEX2Q8IWB9 1127 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 TEX11Q8IYF3 940 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 ERMNQ8TAM6 284 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 MYCBPAPQ8TBZ2 947 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 TBC1D22AQ8WUA7 517 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 EEF2KMTQ96G04 330 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 CCT8L2Q96SF2 557 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 PSMB7Q99436 277 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.06□□□□□ -0.48
LIMS1-207ENST00000422797 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.06□□□□□ -0.48
LIMS1-207ENST00000422797 VCPKMTQ9H867 229 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 NLRC4Q9NPP4 1024 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 SUCLA2Q9P2R7 463 aaPredicted RBP12.06□□□□□ -0.48
LIMS1-207ENST00000422797 CAPN7Q9Y6W3 813 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 A0A0G2JS52 829 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 PITPNM1O00562 1244 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 RAD51CO43502 376 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 SLC37A4O43826 429 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 CALUO43852 315 aaPredicted RBP12.06□□□□□ -0.48
LIMS1-207ENST00000422797 FTCDO95954 541 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 KRT14P02533 472 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 GOLGA8HP0CJ92 632 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms