RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 SPECC1L-ADORA2AF8WAN1 911 aa12.75□□□□□ -0.37
PTPN1-201ENST00000371621 CAPN9O14815 690 aa12.75□□□□□ -0.37
PTPN1-201ENST00000371621 TRAPPC3O43617 180 aa12.75□□□□□ -0.37
PTPN1-201ENST00000371621 CCNT1O60563 726 aaKnown RBP12.75□□□□□ -0.37
PTPN1-201ENST00000371621 CYP7A1P22680 504 aa12.75□□□□□ -0.37
PTPN1-201ENST00000371621 TMED10P49755 219 aaKnown RBP12.75□□□□□ -0.37
PTPN1-201ENST00000371621 NAPAP54920 295 aa12.75□□□□□ -0.37
PTPN1-201ENST00000371621 RNASELQ05823 741 aaKnown RBP12.75□□□□□ -0.37
PTPN1-201ENST00000371621 BYSLQ13895 437 aaKnown RBP12.75□□□□□ -0.37
PTPN1-201ENST00000371621 LONRF1Q17RB8 773 aa12.75□□□□□ -0.37
PTPN1-201ENST00000371621 P3H1Q32P28 736 aa12.75□□□□□ -0.37
PTPN1-201ENST00000371621 CABP7Q86V35 215 aa12.75□□□□□ -0.37
PTPN1-201ENST00000371621 CCDC124Q96CT7 223 aaKnown RBP12.75□□□□□ -0.37
PTPN1-201ENST00000371621 PUS7LQ9H0K6 701 aaKnown RBP12.75□□□□□ -0.37
PTPN1-201ENST00000371621 NT5C3AQ9H0P0 336 aa12.75□□□□□ -0.37
PTPN1-201ENST00000371621 TMBIM4Q9HC24 238 aa12.75□□□□□ -0.37
PTPN1-201ENST00000371621 ALG13Q9NP73 1137 aaKnown RBP12.75□□□□□ -0.37
PTPN1-201ENST00000371621 CAPN11Q9UMQ6 739 aa12.75□□□□□ -0.37
PTPN1-201ENST00000371621 TMA7Q9Y2S6 64 aaKnown RBP12.75□□□□□ -0.37
PTPN1-201ENST00000371621 EFCAB6Q5THR3 1501 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 RNF8O76064 485 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 RTN3O95197 1032 aaPredicted RBP12.74□□□□□ -0.37
PTPN1-201ENST00000371621 GSTT1P30711 240 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 CCDC152Q4G0S7 254 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 LRRC24Q50LG9 513 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 ZMYM1Q5SVZ6 1142 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 KRT79Q5XKE5 535 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 CWF19L1Q69YN2 538 aaKnown RBP12.74□□□□□ -0.37
PTPN1-201ENST00000371621 ILDR1Q86SU0 546 aaPredicted RBP12.74□□□□□ -0.37
PTPN1-201ENST00000371621 UBL4BQ8N7F7 174 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 PIGOQ8TEQ8 1089 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 HPS3Q969F9 1004 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 ZFP69BQ9UJL9 534 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 IQSEC2Q5JU85 1478 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 ATP9AO75110 1047 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 SHBGP04278 402 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 TECP42680 631 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 SLC29A2Q14542 456 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 PPP1R15BQ5SWA1 713 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 AKNAD1Q5T1N1 836 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 RASSF3Q86WH2 238 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 DDX17Q92841 729 aaKnown RBP12.74□□□□□ -0.37
PTPN1-201ENST00000371621 HNRNPRO43390 633 aaKnown RBP12.74□□□□□ -0.37
PTPN1-201ENST00000371621 TSPY3P0CV98 308 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 TSPY8P0CW00 308 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 TSPY1Q01534 308 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 PPP2R5CQ13362 524 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 DNAAF5Q86Y56 855 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 SYCE1Q8N0S2 351 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 PCDHB13Q9Y5F0 798 aa12.74□□□□□ -0.37
PTPN1-201ENST00000371621 EYA2O00167 538 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 ADCY3O60266 1144 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 SHOX2O60902 331 aaPredicted RBP12.73□□□□□ -0.37
PTPN1-201ENST00000371621 EPHB1P54762 984 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 RDH13Q8NBN7 331 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 FLT4P35916 1363 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 INO80Q9ULG1 1556 aaPredicted RBP12.73□□□□□ -0.37
PTPN1-201ENST00000371621 TOM1O60784 492 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 CPA2P48052 419 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 KBTBD12Q3ZCT8 623 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 MDH1BQ5I0G3 518 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 ANKLE2Q86XL3 938 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 ARHGEF40Q8TER5 1519 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 MLH3Q9UHC1 1453 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 ZNF532Q9HCE3 1301 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 PP2D1A8MPX8 630 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 RASA4BC9J798 803 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 RASA4O43374 803 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 ZNF18P17022 549 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 FNTAP49354 379 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 RAB27AP51159 221 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 STRN3Q13033 797 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 MESDQ14696 234 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 LMBRD2Q68DH5 695 aaPredicted RBP12.73□□□□□ -0.37
PTPN1-201ENST00000371621 ALKBH5Q6P6C2 394 aaKnown RBP12.73□□□□□ -0.37
PTPN1-201ENST00000371621 TRIML2Q8N7C3 387 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 NDNQ99608 321 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 SH2D4AQ9H788 454 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 UBAP1Q9NZ09 502 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 VIRMAQ69YN4 1812 aaKnown RBP12.73□□□□□ -0.37
PTPN1-201ENST00000371621 ARHGAP31Q2M1Z3 1444 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 CEP152O94986 1710 aa12.73□□□□□ -0.37
PTPN1-201ENST00000371621 TMEM120BA0PK00 339 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 SPDYE5A6NIY4 337 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 RNF225M0QZC1 329 aaPredicted RBP12.72□□□□□ -0.37
PTPN1-201ENST00000371621 SEMA3EO15041 775 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 ZCWPW2Q504Y3 356 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 SMC1BQ8NDV3 1235 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 GPKOWQ92917 476 aaPredicted RBP eCLIP12.72□□□□□ -0.37
PTPN1-201ENST00000371621 IQCDQ96DY2 449 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 SPZ1Q9BXG8 430 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 ARMCX3Q9UH62 379 aaPredicted RBP12.72□□□□□ -0.37
PTPN1-201ENST00000371621 NOC2LQ9Y3T9 749 aaKnown RBP12.72□□□□□ -0.37
PTPN1-201ENST00000371621 GRIN2DO15399 1336 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 SALL3Q9BXA9 1300 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 KIDINS220Q9ULH0 1771 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 KRT16P08779 473 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 VWA3BQ502W6 1294 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 C1orf146Q5VVC0 180 aa12.72□□□□□ -0.37
PTPN1-201ENST00000371621 CREG2Q8IUH2 290 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms