RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 RWDD2BP57060 319 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 RPS6KA2Q15349 733 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 CFAP61Q8NHU2 1237 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 ANKRD27Q96NW4 1050 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 OLFM3Q96PB7 478 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 RABEP2Q9H5N1 569 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 A6NJR5 290 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 KRT37O76014 449 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 CFBP00751 764 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 DNAJC10Q8IXB1 793 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 PPM1KQ8N3J5 372 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 DCAF4Q8WV16 495 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 OSBPL9Q96SU4 736 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 ADPGKQ9BRR6 497 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 BSDC1Q9NW68 430 aaPredicted RBP11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 KCND2Q9NZV8 630 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 CD19P15391 556 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 USP14P54578 494 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 GUF1Q8N442 669 aaKnown RBP11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 CALB1P05937 261 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 IGBP1P78318 339 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 ACRBPQ8NEB7 543 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 CATSPER1Q8NEC5 780 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 POMGNT1Q8WZA1 660 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 KIF2CQ99661 725 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 CAPN11Q9UMQ6 739 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 NCKAP5LQ9HCH0 1330 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 CHD2O14647 1828 aaKnown RBP11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 TMOD1P28289 359 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 ARHGEF16Q5VV41 709 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 KCTD16Q68DU8 428 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 TRIM68Q6AZZ1 485 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 DPH6Q7L8W6 267 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 SAMSN1Q9NSI8 373 aaKnown RBP11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 USTQ9Y2C2 406 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 THRAP3Q9Y2W1 955 aaKnown RBP11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 GMNCA6NCL1 334 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 PPP2R2AP63151 447 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 BANK1Q8NDB2 785 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 TRIM33Q9UPN9 1127 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 NDUFB9Q9Y6M9 179 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 MYH7P12883 1935 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 MMEP08473 750 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 PHKA1P46020 1223 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 ZNF653Q96CK0 615 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 ACSBG1Q96GR2 724 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 EIF2AQ9BY44 585 aaKnown RBP11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 WNT8AQ9H1J5 351 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 ADGRG1Q9Y653 693 aa11.1□□□□□ -0.63
CCDC88A-202ENST00000336838 SEC31AO94979 1220 aaKnown RBP11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 DDIT3P35638 169 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 TAP1Q03518 808 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 KLHL38Q2WGJ6 581 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 LRRC24Q50LG9 513 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 TOGARAM2Q6ZUX3 1019 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 SCYL3Q8IZE3 742 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 GPKOWQ92917 476 aaPredicted RBP eCLIP11.09□□□□□ -0.632e-6■■□□□ 12.1
CCDC88A-202ENST00000336838 RIOK1Q9BRS2 568 aaKnown RBP11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 PACSIN2Q9UNF0 486 aaPredicted RBP11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 AGLP35573 1532 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 PDS5AQ29RF7 1337 aaKnown RBP11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 A0A1W2PQJ5 194 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 H0YIN7 160 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 H7C1W4 665 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 SLC16A3O15427 465 aaKnown RBP11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 BBOX1O75936 387 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 JAK3P52333 1124 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 USPL1Q5W0Q7 1092 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 TIPINQ9BVW5 301 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 PLA2G12BQ9BX93 195 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 HNRNPDLO14979 420 aaKnown RBP11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 COG7P83436 770 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 C2orf54Q08AI8 447 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 USH1GQ495M9 461 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 TEDDM1Q5T9Z0 273 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 SYN2Q92777 582 aaPredicted RBP11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 MGEA5O60502 916 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 MB21D2Q8IYB1 491 aaPredicted RBP11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 SMAPO00193 183 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 SERPINB6P35237 376 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 BCAMP50895 628 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 ATP2C1P98194 919 aaPredicted RBP11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 PABPC4Q13310 644 aaKnown RBP eCLIP11.09□□□□□ -0.636e-6■■■■■ 28.1
CCDC88A-202ENST00000336838 RASIP1Q5U651 963 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 SDR42E1Q8WUS8 393 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 RNF34Q969K3 372 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 TSPYL2Q9H2G4 693 aaPredicted RBP11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 EMILIN3Q9NT22 766 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 ENC1O14682 589 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 FAM47AQ5JRC9 791 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 FAM102BQ5T8I3 360 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 LRGUKQ96M69 825 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 MAP3K14Q99558 947 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 GREM2Q9H772 168 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 SERPINB13Q9UIV8 391 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 EDC3Q96F86 508 aaKnown RBP11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 CACYBPQ9HB71 228 aaKnown RBP11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 PLAAQ9Y263 795 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 MYH15Q9Y2K3 1946 aa11.09□□□□□ -0.63
CCDC88A-202ENST00000336838 STAT2P52630 851 aa11.08□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms