RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 EXOC4Q96A65 974 aa10.04□□□□□ -0.8
CUX1-201ENST00000292535 LRRC47Q8N1G4 583 aaKnown RBP10.03□□□□□ -0.8
CUX1-201ENST00000292535 THEM5Q8N1Q8 247 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 TCP11Q8WWU5 503 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 OTUB1Q96FW1 271 aaPredicted RBP10.03□□□□□ -0.8
CUX1-201ENST00000292535 ZC4H2Q9NQZ6 224 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 CIAO1O76071 339 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 PPARDQ03181 441 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 NR1H3Q13133 447 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 TTC8Q8TAM2 541 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 BCAS4Q8TDM0 211 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.03□□□□□ -0.8
CUX1-201ENST00000292535 ZNF804BA4D1E1 1349 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 PHACTR3Q96KR7 559 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 SERTAD1Q9UHV2 236 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 ZBTB33Q86T24 672 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 URGCPQ8TCY9 931 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 ERBB4Q15303 1308 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 ZNF263O14978 683 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 BASP1P80723 227 aaKnown RBP10.03□□□□□ -0.8
CUX1-201ENST00000292535 SLMAPQ14BN4 828 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.03□□□□□ -0.8
CUX1-201ENST00000292535 EPAS1Q99814 870 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 PLEKHA4Q9H4M7 779 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 INTS9Q9NV88 658 aaKnown RBP10.03□□□□□ -0.8
CUX1-201ENST00000292535 CDC25BP30305 580 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 RASSF7Q02833 373 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 ALS2CLQ60I27 953 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 TTC19Q6DKK2 380 aaPredicted RBP10.03□□□□□ -0.8
CUX1-201ENST00000292535 STX19Q8N4C7 294 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 BANK1Q8NDB2 785 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 RNF26Q9BY78 433 aaPredicted RBP10.03□□□□□ -0.8
CUX1-201ENST00000292535 COG4Q9H9E3 785 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 SUN2Q9UH99 717 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 USP19O94966 1318 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 PPP6R2O75170 966 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 ATP1A2P50993 1020 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 DHX9Q08211 1270 aaKnown RBP10.03□□□□□ -0.8
CUX1-201ENST00000292535 GPIHBP1Q8IV16 184 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 PYROXD1Q8WU10 500 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 CFAP36Q96G28 342 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 DESI2Q9BSY9 194 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 GRIN1Q05586 938 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 DPYSL4O14531 572 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 TJP3O95049 919 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 KCNA6P17658 529 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 UBE3CQ15386 1083 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 ACAD11Q709F0 780 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 MMTAG2Q9BU76 263 aaKnown RBP10.03□□□□□ -0.8
CUX1-201ENST00000292535 PAPOLAP51003 745 aaKnown RBP10.03□□□□□ -0.8
CUX1-201ENST00000292535 CENPUQ71F23 418 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 SHANK2Q9UPX8 1470 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 MYH11P35749 1972 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 ME3Q16798 604 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 CEP170P1Q96L14 293 aa10.03□□□□□ -0.8
CUX1-201ENST00000292535 STX18Q9P2W9 335 aaKnown RBP10.03□□□□□ -0.8
CUX1-201ENST00000292535 MSTO1Q9BUK6 570 aa10.02□□□□□ -0.8
CUX1-201ENST00000292535 GNAT1P11488 350 aa10.02□□□□□ -0.8
CUX1-201ENST00000292535 ASNSD1Q9NWL6 643 aa10.02□□□□□ -0.8
CUX1-201ENST00000292535 FARP1Q9Y4F1 1045 aaPredicted RBP10.02□□□□□ -0.8
CUX1-201ENST00000292535 ZBED1O96006 694 aa10.02□□□□□ -0.8
CUX1-201ENST00000292535 KLHDC4Q8TBB5 520 aa10.02□□□□□ -0.8
CUX1-201ENST00000292535 ENOX1Q8TC92 643 aaKnown RBP10.02□□□□□ -0.8
CUX1-201ENST00000292535 FAM96AQ9H5X1 160 aa10.02□□□□□ -0.8
CUX1-201ENST00000292535 NPC1L1Q9UHC9 1359 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 ZMYM4Q5VZL5 1548 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 KRT37O76014 449 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 ATXN8OSP0DMR3 200 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 PLS3P13797 630 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 DYNLT1P63172 113 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 MT-ND3P03897 115 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 SYDE2Q5VT97 1194 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 FAF2Q96CS3 445 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 PSMA2P25787 234 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 KIF19Q2TAC6 998 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 FSCBQ5H9T9 825 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 LMNAP02545 664 aaKnown RBP10.02□□□□□ -0.81
CUX1-201ENST00000292535 POLR3EQ9NVU0 708 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 FANCLQ9NW38 375 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 ESRRBO95718 433 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 KRT4P19013 534 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 COPB1P53618 953 aaKnown RBP10.02□□□□□ -0.81
CUX1-201ENST00000292535 ARL4CP56559 192 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 TFAMQ00059 246 aaKnown RBP10.02□□□□□ -0.81
CUX1-201ENST00000292535 CC2D2BQ6DHV5 1058 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 IGSF3O75054 1194 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 SKIP12755 728 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 GUCY2DQ02846 1103 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 STK25O00506 426 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 TEDDM1Q5T9Z0 273 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 MRFAP1L1Q96HT8 127 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 THAP9Q9H5L6 903 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 AKAP6Q13023 2319 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 CREB3O43889 395 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 SNX2O60749 519 aa10.02□□□□□ -0.81
CUX1-201ENST00000292535 CARMIL3Q8ND23 1372 aa10.01□□□□□ -0.81
CUX1-201ENST00000292535 PFKFB2O60825 505 aa10.01□□□□□ -0.81
CUX1-201ENST00000292535 UGGT2Q9NYU1 1516 aa10.01□□□□□ -0.81
CUX1-201ENST00000292535 EIF3BP55884 814 aaKnown RBP10.01□□□□□ -0.81
CUX1-201ENST00000292535 CHRNDQ07001 517 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms