RNA–Protein interactions for RNA: ENST00000260810.9

TOPBP1-201, Transcript of DNA topoisomerase II binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOPBP1, Length 5,378 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-201ENST00000260810 SH2B1Q9NRF2 756 aaPredicted RBP6.49□□□□□ -1.37
TOPBP1-201ENST00000260810 SYNPO2Q9UMS6 1093 aa6.49□□□□□ -1.37
TOPBP1-201ENST00000260810 PRRC2BQ5JSZ5 2229 aaKnown RBP6.49□□□□□ -1.37
TOPBP1-201ENST00000260810 MGEA5O60502 916 aa6.49□□□□□ -1.37
TOPBP1-201ENST00000260810 WTAPQ15007 396 aa6.49□□□□□ -1.37
TOPBP1-201ENST00000260810 ZNF568Q3ZCX4 644 aa6.49□□□□□ -1.37
TOPBP1-201ENST00000260810 OPTNQ96CV9 577 aa6.49□□□□□ -1.37
TOPBP1-201ENST00000260810 GPCPD1Q9NPB8 672 aa6.49□□□□□ -1.37
TOPBP1-201ENST00000260810 MORF4L1Q9UBU8 362 aa6.49□□□□□ -1.37
TOPBP1-201ENST00000260810 ZNF200P98182 395 aaPredicted RBP6.49□□□□□ -1.37
TOPBP1-201ENST00000260810 ZNF174Q15697 407 aa6.49□□□□□ -1.37
TOPBP1-201ENST00000260810 TMEM179Q6ZVK1 233 aa6.49□□□□□ -1.37
TOPBP1-201ENST00000260810 REXO1L1PQ8IX06 675 aa6.49□□□□□ -1.37
TOPBP1-201ENST00000260810 CHFRQ96EP1 664 aa6.49□□□□□ -1.37
TOPBP1-201ENST00000260810 TOP1P11387 765 aaKnown RBP6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 RPS12P25398 132 aaKnown RBP6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 TM4SF4P48230 202 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 EIF4EBP2Q13542 120 aaPredicted RBP6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 GRB14Q14449 540 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 ANKRD40Q6AI12 368 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 ISM2Q6H9L7 571 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 ELOA2Q8IYF1 753 aaPredicted RBP6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 GIMAP8Q8ND71 665 aaPredicted RBP6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 KAT5Q92993 513 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 ZMAT2Q96NC0 199 aaKnown RBP6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 VN1R3Q9BXE9 311 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 PXMP2Q9NR77 195 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 ADD3Q9UEY8 706 aaKnown RBP6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 MAFBQ9Y5Q3 323 aaPredicted RBP6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 SLC10A3P09131 477 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 PNMA6AP0CW24 399 aaPredicted RBP6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 CACNB1Q02641 598 aaPredicted RBP6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 TSC1Q92574 1164 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 KIFC3Q9BVG8 833 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 CCSER1Q9C0I3 900 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 RAVER2Q9HCJ3 691 aaKnown RBP6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 ADARB2Q9NS39 739 aaKnown RBP6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 PCDHA3Q9Y5H8 950 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 MYPNQ86TC9 1320 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 MYO18AQ92614 2054 aaKnown RBP6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 ZC2HC1CQ53FD0 456 aaPredicted RBP6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 SPRYD7Q5W111 196 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 LARP1BQ659C4 914 aaKnown RBP6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 RIN3Q8TB24 985 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 RPAP3Q9H6T3 665 aaPredicted RBP6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 KCNH7Q9NS40 1196 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 KIAA1468Q9P260 1216 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 LY6KQ17RY6 165 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 CBWD6Q4V339 395 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 CBWD3Q5JTY5 395 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 CBWD5Q5RIA9 395 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 CAVIN1Q6NZI2 390 aaKnown RBP6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 LRSAM1Q6UWE0 723 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 ADSSL1Q8N142 457 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 BLZF1Q9H2G9 400 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 AGO4Q9HCK5 861 aaKnown RBP6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 UMODL1Q5DID0 1318 aa6.48□□□□□ -1.37
TOPBP1-201ENST00000260810 PNMA6FA0A0J9YX94 578 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 SPATA31C2B4DYI2 1134 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 ANKRD63C9JTQ0 380 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 MSCO60682 206 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 ZNF252P-AS1Q0IIN9 211 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 RAD9BQ6WBX8 426 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 AGGF1Q8N302 714 aaeCLIP6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 KIFC2Q96AC6 838 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 WRNIP1Q96S55 665 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 FIBPO43427 364 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 EVI5O60447 810 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 PCP11498 1178 aaKnown RBP6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 PLCG1P19174 1290 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 ZXDBP98169 803 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 C3orf58Q8NDZ4 430 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 TRAPPC12Q8WVT3 735 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 TJP2Q9UDY2 1190 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 TRIM10Q9UDY6 481 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 NPEPPSP55786 919 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 ABCB5Q2M3G0 1257 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 KRBA2Q6ZNG9 492 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 PLXNA2O75051 1894 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 AKAP3O75969 853 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 VNN1O95497 513 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 YEATS4O95619 227 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 PTP4A2Q12974 167 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 RTN1Q16799 776 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 RRP12Q5JTH9 1297 aaKnown RBP6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 IFIT1BQ5T764 474 aaKnown RBP6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 OTUD1Q5VV17 481 aaPredicted RBP6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 ALKAL1Q6UXT8 129 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 NYAP1Q6ZVC0 841 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 WDTC1Q8N5D0 677 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 CEP120Q8N960 986 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 ZSCAN18Q8TBC5 510 aaPredicted RBP6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 FBXL18Q96ME1 805 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 NR2E1Q9Y466 385 aa6.47□□□□□ -1.37
TOPBP1-201ENST00000260810 SHISA7A6NL88 538 aa6.46□□□□□ -1.37
TOPBP1-201ENST00000260810 ARHGAP4P98171 946 aa6.46□□□□□ -1.37
TOPBP1-201ENST00000260810 CRHR2Q13324 411 aa6.46□□□□□ -1.37
TOPBP1-201ENST00000260810 TKFCQ3LXA3 575 aa6.46□□□□□ -1.37
TOPBP1-201ENST00000260810 RBM26Q5T8P6 1007 aaKnown RBP6.46□□□□□ -1.37
TOPBP1-201ENST00000260810 BLIDQ8IZY5 108 aa6.46□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms