RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 ANO3Q9BYT9 981 aa13.83□□□□□ -0.2
USP40-201ENST00000251722 RPS12P25398 132 aaKnown RBP13.83□□□□□ -0.2
USP40-201ENST00000251722 TTLL4Q14679 1199 aa13.83□□□□□ -0.2
USP40-201ENST00000251722 ZNF658Q5TYW1 1059 aaPredicted RBP13.83□□□□□ -0.2
USP40-201ENST00000251722 CAPRIN2Q6IMN6 1127 aaKnown RBP13.83□□□□□ -0.2
USP40-201ENST00000251722 FAM186BQ8IYM0 893 aa13.83□□□□□ -0.2
USP40-201ENST00000251722 NDUFAF2Q8N183 169 aa13.83□□□□□ -0.2
USP40-201ENST00000251722 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.83□□□□□ -0.2
USP40-201ENST00000251722 HOMER3Q9NSC5 361 aa13.83□□□□□ -0.2
USP40-201ENST00000251722 IKBKBO14920 756 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 ZBTB5O15062 677 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 SASH1O94885 1247 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 XPAP23025 273 aaPredicted RBP13.82□□□□□ -0.2
USP40-201ENST00000251722 MAN2A1Q16706 1144 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 MTIF3Q9H2K0 278 aaKnown RBP13.82□□□□□ -0.2
USP40-201ENST00000251722 KCNH4Q9UQ05 1017 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 RHOXF2BP0C7M4 288 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 TPD52P55327 224 aaPredicted RBP13.82□□□□□ -0.2
USP40-201ENST00000251722 TYW1BQ6NUM6 668 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 PDXDC2PQ6P474 469 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 THEM5Q8N1Q8 247 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 ARHGAP18Q8N392 663 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 PPM1KQ8N3J5 372 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 GFM2Q969S9 779 aaKnown RBP13.82□□□□□ -0.2
USP40-201ENST00000251722 SPDL1Q96EA4 605 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 RHOXF2Q9BQY4 288 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 CAPS2Q9BXY5 557 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 RPF1Q9H9Y2 349 aaKnown RBP13.82□□□□□ -0.2
USP40-201ENST00000251722 RNF181Q9P0P0 153 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 ZNF521Q96K83 1311 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.82□□□□□ -0.2
USP40-201ENST00000251722 CYP21A2P08686 494 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 DLATP10515 647 aaKnown RBP13.82□□□□□ -0.2
USP40-201ENST00000251722 PHKA2P46019 1235 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 CASC4Q6P4E1 433 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 BZW1Q7L1Q6 419 aaKnown RBP13.82□□□□□ -0.2
USP40-201ENST00000251722 P2RX5Q93086 422 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 CARD6Q9BX69 1037 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 PPANQ9NQ55 473 aaKnown RBP13.82□□□□□ -0.2
USP40-201ENST00000251722 RASSF2P50749 326 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 LRRC63Q05C16 580 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 STYK1Q6J9G0 422 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 RDH13Q8NBN7 331 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 ITGB1BP2Q9UKP3 347 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 NRKQ7Z2Y5 1582 aa13.82□□□□□ -0.2
USP40-201ENST00000251722 SLFN14P0C7P3 912 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 CUL3Q13618 768 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 SLFNL1Q499Z3 407 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 TRIM68Q6AZZ1 485 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 SPICE1Q8N0Z3 855 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 STRBPQ96SI9 672 aaKnown RBP13.81□□□□□ -0.2
USP40-201ENST00000251722 PCDHA7Q9UN72 937 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 PCDHB4Q9Y5E5 795 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 ARHGEF40Q8TER5 1519 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 SPECC1L-ADORA2AF8WAN1 911 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 ZNF131P52739 623 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 THAP9Q9H5L6 903 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 KDM6AO15550 1401 aaPredicted RBP13.81□□□□□ -0.2
USP40-201ENST00000251722 DCCP43146 1447 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 USP17L15C9J2P7 530 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 USP17L13C9JLJ4 530 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 USP17L11C9JVI0 530 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 USP17L18D6R9N7 530 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 USP17L22D6RA61 530 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 USP17L17D6RBQ6 530 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 USP17L19D6RCP7 530 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 USP17L20D6RJB6 530 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 CDC25BP30305 580 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 APBA1Q02410 837 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 USP17L24Q0WX57 530 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 ASPHQ12797 758 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 PALM2Q8IXS6 379 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 ATP6V0A4Q9HBG4 840 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 UTP6Q9NYH9 597 aaKnown RBP13.81□□□□□ -0.2
USP40-201ENST00000251722 ZNRF3Q9ULT6 936 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 SAR1BQ9Y6B6 198 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 WDR64B1ANS9 1081 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 GNGT1P63211 74 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 TMED1Q13445 227 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 DENND2CQ68D51 928 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 ELMOD1Q8N336 334 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 NSUN7Q8NE18 718 aaKnown RBP13.81□□□□□ -0.2
USP40-201ENST00000251722 URGCPQ8TCY9 931 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 TRIM62Q9BVG3 475 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 TIPINQ9BVW5 301 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 C19orf81C9J6K1 198 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 KPNA2P52292 529 aaKnown RBP13.81□□□□□ -0.2
USP40-201ENST00000251722 SRLQ86TD4 932 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 LMBRD1Q9NUN5 540 aa13.81□□□□□ -0.2
USP40-201ENST00000251722 CD163L1Q9NR16 1453 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 IRX4P78413 519 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 RSRC2Q7L4I2 434 aaKnown RBP13.8□□□□□ -0.2
USP40-201ENST00000251722 SRPRBQ9Y5M8 271 aaKnown RBP13.8□□□□□ -0.2
USP40-201ENST00000251722 HEXIM1O94992 359 aaKnown RBP13.8□□□□□ -0.2
USP40-201ENST00000251722 SEC24BO95487 1268 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 NR2F2P24468 414 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 PPARGP37231 505 aaPredicted RBP13.8□□□□□ -0.2
USP40-201ENST00000251722 NLRC4Q9NPP4 1024 aa13.8□□□□□ -0.2
USP40-201ENST00000251722 PIH1D3Q9NQM4 214 aaKnown RBP13.8□□□□□ -0.2
USP40-201ENST00000251722 CPSF3Q9UKF6 684 aaKnown RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms