RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 CBX1P83916 185 aa23.86■■□□□ 1.41
CLN6-224ENST00000638076 FKBP3Q00688 224 aaKnown RBP23.86■■□□□ 1.41
CLN6-224ENST00000638076 TRAF1Q13077 416 aa23.86■■□□□ 1.41
CLN6-224ENST00000638076 TBC1D5Q92609 795 aa23.86■■□□□ 1.41
CLN6-224ENST00000638076 VPS33BQ9H267 617 aa23.86■■□□□ 1.41
CLN6-224ENST00000638076 VCPKMTQ9H867 229 aa23.86■■□□□ 1.41
CLN6-224ENST00000638076 MYO1AQ9UBC5 1043 aa23.86■■□□□ 1.41
CLN6-224ENST00000638076 SIK3Q9Y2K2 1263 aa23.86■■□□□ 1.41
CLN6-224ENST00000638076 SMCHD1A6NHR9 2005 aa23.86■■□□□ 1.41
CLN6-224ENST00000638076 TRAF5O00463 557 aa23.85■■□□□ 1.41
CLN6-224ENST00000638076 NELFCDQ8IXH7 590 aa23.85■■□□□ 1.41
CLN6-224ENST00000638076 MTMR14Q8NCE2 650 aa23.85■■□□□ 1.41
CLN6-224ENST00000638076 CHURC1Q8WUH1 139 aa23.85■■□□□ 1.41
CLN6-224ENST00000638076 VAV3Q9UKW4 847 aa23.85■■□□□ 1.41
CLN6-224ENST00000638076 DNM3Q9UQ16 869 aa23.85■■□□□ 1.41
CLN6-224ENST00000638076 PITPNM2Q9BZ72 1349 aa23.85■■□□□ 1.41
CLN6-224ENST00000638076 FRMD3A2A2Y4 597 aa23.85■■□□□ 1.41
CLN6-224ENST00000638076 CTAGE9A4FU28 777 aa23.85■■□□□ 1.41
CLN6-224ENST00000638076 KIF4BQ2VIQ3 1234 aa23.85■■□□□ 1.41
CLN6-224ENST00000638076 FAM83AQ86UY5 434 aa23.85■■□□□ 1.41
CLN6-224ENST00000638076 IQCDQ96DY2 449 aa23.85■■□□□ 1.41
CLN6-224ENST00000638076 RANBP17Q9H2T7 1088 aaKnown RBP23.85■■□□□ 1.41
CLN6-224ENST00000638076 ZHX3Q9H4I2 956 aa23.85■■□□□ 1.41
CLN6-224ENST00000638076 NHEJ1Q9H9Q4 299 aaPredicted RBP23.85■■□□□ 1.41
CLN6-224ENST00000638076 CAP2P40123 477 aa23.84■■□□□ 1.41
CLN6-224ENST00000638076 HERVK_113P62684 666 aa23.84■■□□□ 1.41
CLN6-224ENST00000638076 PABPC4Q13310 644 aaKnown RBP eCLIP23.84■■□□□ 1.416e-9■■■□□ 15.4
CLN6-224ENST00000638076 FAM207AQ9NSI2 230 aaPredicted RBP23.84■■□□□ 1.41
CLN6-224ENST00000638076 TRIM10Q9UDY6 481 aa23.84■■□□□ 1.41
CLN6-224ENST00000638076 GUCA1BQ9UMX6 200 aa23.84■■□□□ 1.41
CLN6-224ENST00000638076 COL4A3BPQ9Y5P4 624 aa23.84■■□□□ 1.41
CLN6-224ENST00000638076 STK24Q9Y6E0 443 aa23.84■■□□□ 1.41
CLN6-224ENST00000638076 CYLC1P35663 651 aaPredicted RBP23.84■■□□□ 1.41
CLN6-224ENST00000638076 CXCL9Q07325 125 aa23.84■■□□□ 1.41
CLN6-224ENST00000638076 SAMD1Q6SPF0 538 aaPredicted RBP23.84■■□□□ 1.41
CLN6-224ENST00000638076 CCDC84Q86UT8 332 aaPredicted RBP23.84■■□□□ 1.41
CLN6-224ENST00000638076 SYT2Q8N9I0 419 aaPredicted RBP23.84■■□□□ 1.41
CLN6-224ENST00000638076 SCFD1Q8WVM8 642 aa23.84■■□□□ 1.41
CLN6-224ENST00000638076 EMILIN3Q9NT22 766 aa23.84■■□□□ 1.41
CLN6-224ENST00000638076 DDX41Q9UJV9 622 aaKnown RBP23.84■■□□□ 1.41
CLN6-224ENST00000638076 IGLV3-22A0A075B6J6 115 aa23.83■■□□□ 1.41
CLN6-224ENST00000638076 EPHB6O15197 1021 aa23.83■■□□□ 1.41
CLN6-224ENST00000638076 BAG6P46379 1132 aa23.83■■□□□ 1.41
CLN6-224ENST00000638076 CYP4A11Q02928 519 aa23.83■■□□□ 1.41
CLN6-224ENST00000638076 GLIS2Q9BZE0 524 aaPredicted RBP23.83■■□□□ 1.41
CLN6-224ENST00000638076 HAUS4Q9H6D7 363 aa23.83■■□□□ 1.41
CLN6-224ENST00000638076 MMRN2Q9H8L6 949 aa23.83■■□□□ 1.41
CLN6-224ENST00000638076 GCOM1H8Y6P7 765 aaPredicted RBP23.83■■□□□ 1.4
CLN6-224ENST00000638076 KIF20AO95235 890 aa23.83■■□□□ 1.4
CLN6-224ENST00000638076 POLR2MP0CAP2 368 aa23.83■■□□□ 1.4
CLN6-224ENST00000638076 KRT83P78385 493 aa23.83■■□□□ 1.4
CLN6-224ENST00000638076 NBPF9Q3BBW0 867 aa23.83■■□□□ 1.4
CLN6-224ENST00000638076 CCDC170Q8IYT3 715 aa23.83■■□□□ 1.4
CLN6-224ENST00000638076 NAPGQ99747 312 aaPredicted RBP23.83■■□□□ 1.4
CLN6-224ENST00000638076 TANGO6Q9C0B7 1094 aa23.83■■□□□ 1.4
CLN6-224ENST00000638076 CDC23Q9UJX2 597 aa23.83■■□□□ 1.4
CLN6-224ENST00000638076 WNT10BO00744 389 aa23.82■■□□□ 1.4
CLN6-224ENST00000638076 SF3B2Q13435 895 aaKnown RBP23.82■■□□□ 1.4
CLN6-224ENST00000638076 GIT2Q14161 759 aa23.82■■□□□ 1.4
CLN6-224ENST00000638076 CCDC40Q4G0X9 1142 aa23.82■■□□□ 1.4
CLN6-224ENST00000638076 RSRC2Q7L4I2 434 aaKnown RBP23.82■■□□□ 1.4
CLN6-224ENST00000638076 SH2D4AQ9H788 454 aa23.82■■□□□ 1.4
CLN6-224ENST00000638076 TFR2Q9UP52 801 aa23.82■■□□□ 1.4
CLN6-224ENST00000638076 CLCN6P51797 869 aa23.82■■□□□ 1.4
CLN6-224ENST00000638076 CDK17Q00537 523 aa23.82■■□□□ 1.4
CLN6-224ENST00000638076 TEX35Q5T0J7 233 aa23.82■■□□□ 1.4
CLN6-224ENST00000638076 CEP63Q96MT8 703 aa23.82■■□□□ 1.4
CLN6-224ENST00000638076 EIF2AK1Q9BQI3 630 aaKnown RBP23.82■■□□□ 1.4
CLN6-224ENST00000638076 WDR18Q9BV38 432 aa23.82■■□□□ 1.4
CLN6-224ENST00000638076 KCTD10Q9H3F6 313 aa23.82■■□□□ 1.4
CLN6-224ENST00000638076 OGFRQ9NZT2 677 aa23.82■■□□□ 1.4
CLN6-224ENST00000638076 PGAP2Q9UHJ9 254 aa23.82■■□□□ 1.4
CLN6-224ENST00000638076 EML1O00423 815 aa23.81■■□□□ 1.4
CLN6-224ENST00000638076 TEX2Q8IWB9 1127 aa23.81■■□□□ 1.4
CLN6-224ENST00000638076 ZBED3Q96IU2 234 aaPredicted RBP23.81■■□□□ 1.4
CLN6-224ENST00000638076 EPC1Q9H2F5 836 aa23.81■■□□□ 1.4
CLN6-224ENST00000638076 FBXO28Q9NVF7 368 aa23.81■■□□□ 1.4
CLN6-224ENST00000638076 MRPL11Q9Y3B7 192 aaKnown RBP23.81■■□□□ 1.4
CLN6-224ENST00000638076 EIF3CLB5ME19 914 aaKnown RBP23.81■■□□□ 1.4
CLN6-224ENST00000638076 PLA2G6O60733 806 aa23.81■■□□□ 1.4
CLN6-224ENST00000638076 KIAA1328Q86T90 577 aa23.81■■□□□ 1.4
CLN6-224ENST00000638076 FAM160B2Q86V87 743 aa23.81■■□□□ 1.4
CLN6-224ENST00000638076 CCDC155Q8N6L0 562 aa23.81■■□□□ 1.4
CLN6-224ENST00000638076 EIF3CQ99613 913 aaKnown RBP23.81■■□□□ 1.4
CLN6-224ENST00000638076 REEP2Q9BRK0 252 aa23.81■■□□□ 1.4
CLN6-224ENST00000638076 POLR3CQ9BUI4 534 aaPredicted RBP23.81■■□□□ 1.4
CLN6-224ENST00000638076 ZNF446Q9NWS9 450 aa23.81■■□□□ 1.4
CLN6-224ENST00000638076 PLAGL2Q9UPG8 496 aa23.81■■□□□ 1.4
CLN6-224ENST00000638076 SCAF8Q9UPN6 1271 aaKnown RBP23.81■■□□□ 1.4
CLN6-224ENST00000638076 UBXN2AP68543 259 aa23.8■■□□□ 1.4
CLN6-224ENST00000638076 TUBB2AQ13885 445 aa23.8■■□□□ 1.4
CLN6-224ENST00000638076 CCDC122Q5T0U0 273 aa23.8■■□□□ 1.4
CLN6-224ENST00000638076 SLC30A10Q6XR72 485 aa23.8■■□□□ 1.4
CLN6-224ENST00000638076 SLC16A10Q8TF71 515 aa23.8■■□□□ 1.4
CLN6-224ENST00000638076 GOLGA1Q92805 767 aa23.8■■□□□ 1.4
CLN6-224ENST00000638076 TUBB2BQ9BVA1 445 aa23.8■■□□□ 1.4
CLN6-224ENST00000638076 ZSWIM4Q9H7M6 989 aa23.8■■□□□ 1.4
CLN6-224ENST00000638076 RGL1Q9NZL6 768 aa23.8■■□□□ 1.4
CLN6-224ENST00000638076 SHTN1A0MZ66 631 aa23.79■■□□□ 1.4
CLN6-224ENST00000638076 IPO7O95373 1038 aaKnown RBP23.79■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms