RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 HARSP12081 509 aaKnown RBP11.18□□□□□ -0.62
VPS39-214ENST00000614932 ATP6V1C1P21283 382 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 CDC27P30260 824 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 RBL2Q08999 1139 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 HSP90AA4PQ58FG1 418 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 CPLX4Q7Z7G2 160 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 VPS37DQ86XT2 251 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 MYOCDQ8IZQ8 938 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 MMGT1Q8N4V1 131 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 PPP1R14BQ96C90 147 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 HINFPQ9BQA5 517 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 GPCPD1Q9NPB8 672 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 DLGAP2Q9P1A6 1054 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 CLIC4Q9Y696 253 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 GSTA2P09210 222 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 EVX2Q03828 476 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 C2orf54Q08AI8 447 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 NR1I3Q14994 352 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 UBE3CQ15386 1083 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 OR52E8Q6IFG1 317 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 MAEAQ7L5Y9 396 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 TMTC1Q8IUR5 882 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 WDR66Q8TBY9 1149 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 DDX27Q96GQ7 796 aaKnown RBP11.18□□□□□ -0.62
VPS39-214ENST00000614932 CCDC43Q96MW1 224 aaKnown RBP11.18□□□□□ -0.62
VPS39-214ENST00000614932 LLPHQ9BRT6 129 aaKnown RBP11.18□□□□□ -0.62
VPS39-214ENST00000614932 TAF1P21675 1872 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 PLCH1Q4KWH8 1693 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 PHLPP1O60346 1717 aa11.18□□□□□ -0.62
VPS39-214ENST00000614932 KIF28PB7ZC32 967 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 IFIT3O14879 490 aaKnown RBP11.17□□□□□ -0.62
VPS39-214ENST00000614932 TOM1O60784 492 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 CYP7A1P22680 504 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 HPDP32754 393 aaPredicted RBP11.17□□□□□ -0.62
VPS39-214ENST00000614932 METAP2P50579 478 aaKnown RBP eCLIP11.17□□□□□ -0.62
VPS39-214ENST00000614932 ALDH5A1P51649 535 aaPredicted RBP11.17□□□□□ -0.62
VPS39-214ENST00000614932 PSMD7P51665 324 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 USP46P62068 366 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 PARP10Q53GL7 1025 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 TMEM67Q5HYA8 995 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 SH2D4BQ5SQS7 431 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 SEPT14Q6ZU15 432 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 SAMD3Q8N6K7 520 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 CCDC197Q8NCU1 140 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 CPLX3Q8WVH0 158 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 PRCCQ92733 491 aaPredicted RBP11.17□□□□□ -0.62
VPS39-214ENST00000614932 CCDC51Q96ER9 411 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 TAF1DQ9H5J8 278 aaPredicted RBP11.17□□□□□ -0.62
VPS39-214ENST00000614932 ZSWIM5Q9P217 1185 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 DMGDHQ9UI17 866 aaKnown RBP11.17□□□□□ -0.62
VPS39-214ENST00000614932 AKAP11Q9UKA4 1901 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 PRDM1O75626 825 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 ZNF18P17022 549 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 FUT4P22083 530 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 FECHP22830 423 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 CA8P35219 290 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 DYNLL1P63167 89 aaKnown RBP11.17□□□□□ -0.62
VPS39-214ENST00000614932 ZNF365Q70YC5 407 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 ANKS4BQ8N8V4 417 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 POLR3CQ9BUI4 534 aaPredicted RBP11.17□□□□□ -0.62
VPS39-214ENST00000614932 GUCA1BQ9UMX6 200 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 SALL1Q9NSC2 1324 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 GSG1L2A8MUP6 293 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 MFAP3LO75121 409 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 IDO1P14902 403 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 GSTT1P30711 240 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 OXCT1P55809 520 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 ATP11AP98196 1134 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 STK38Q15208 465 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 CACNA2D4Q7Z3S7 1137 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 EXOC3L1Q86VI1 746 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 ERMNQ8TAM6 284 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 KCNG4Q8TDN1 519 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 SLC12A6Q9UHW9 1150 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 ANGEL1Q9UNK9 670 aaKnown RBP11.17□□□□□ -0.62
VPS39-214ENST00000614932 ZNF652Q9Y2D9 606 aa11.17□□□□□ -0.62
VPS39-214ENST00000614932 PDE2AO00408 941 aaPredicted RBP11.16□□□□□ -0.62
VPS39-214ENST00000614932 BAG3O95817 575 aa11.16□□□□□ -0.62
VPS39-214ENST00000614932 TNFRSF8P28908 595 aa11.16□□□□□ -0.62
VPS39-214ENST00000614932 MARCKSP29966 332 aaPredicted RBP11.16□□□□□ -0.62
VPS39-214ENST00000614932 CNGA4Q8IV77 575 aa11.16□□□□□ -0.62
VPS39-214ENST00000614932 SLC15A3Q8IY34 581 aa11.16□□□□□ -0.62
VPS39-214ENST00000614932 STAG2Q8N3U4 1231 aa11.16□□□□□ -0.62
VPS39-214ENST00000614932 ZNF653Q96CK0 615 aa11.16□□□□□ -0.62
VPS39-214ENST00000614932 LRRC1Q9BTT6 524 aa11.16□□□□□ -0.62
VPS39-214ENST00000614932 SH3GLB1Q9Y371 365 aa11.16□□□□□ -0.62
VPS39-214ENST00000614932 SLC4A7Q9Y6M7 1214 aa11.16□□□□□ -0.62
VPS39-214ENST00000614932 hCG_1642624A0A1W2PR95 340 aa11.16□□□□□ -0.62
VPS39-214ENST00000614932 HIP1RO75146 1068 aa11.16□□□□□ -0.62
VPS39-214ENST00000614932 PAEPP09466 180 aa11.16□□□□□ -0.62
VPS39-214ENST00000614932 XBP1P17861 261 aa11.16□□□□□ -0.62
VPS39-214ENST00000614932 HDAC4P56524 1084 aa11.16□□□□□ -0.62
VPS39-214ENST00000614932 LINC00301Q8NCQ3 95 aa11.16□□□□□ -0.62
VPS39-214ENST00000614932 RAPGEF5Q92565 580 aa11.16□□□□□ -0.62
VPS39-214ENST00000614932 FAM192AQ9GZU8 254 aa11.16□□□□□ -0.62
VPS39-214ENST00000614932 LUC7LQ9NQ29 371 aaKnown RBP11.16□□□□□ -0.62
VPS39-214ENST00000614932 ADAM22Q9P0K1 906 aa11.16□□□□□ -0.62
VPS39-214ENST00000614932 ITGB1BP2Q9UKP3 347 aa11.16□□□□□ -0.62
VPS39-214ENST00000614932 AHDC1Q5TGY3 1603 aaPredicted RBP11.15□□□□□ -0.62
VPS39-214ENST00000614932 MYH3P11055 1940 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms