RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 IFNAR1P17181 557 aa17.3■□□□□ 0.36
TRIM28-205ENST00000595028 PSEN2P49810 448 aa17.3■□□□□ 0.36
TRIM28-205ENST00000595028 CHMP4BP1P59074 171 aa17.3■□□□□ 0.36
TRIM28-205ENST00000595028 ANAPC15P60006 121 aa17.3■□□□□ 0.36
TRIM28-205ENST00000595028 AP3B2Q13367 1082 aa17.3■□□□□ 0.36
TRIM28-205ENST00000595028 ADAMTS19Q8TE59 1207 aa17.3■□□□□ 0.36
TRIM28-205ENST00000595028 ATXN2LQ8WWM7 1075 aaKnown RBP17.3■□□□□ 0.36
TRIM28-205ENST00000595028 PHKBQ93100 1093 aa17.3■□□□□ 0.36
TRIM28-205ENST00000595028 SENP7Q9BQF6 1050 aa17.3■□□□□ 0.36
TRIM28-205ENST00000595028 RNF26Q9BY78 433 aaPredicted RBP17.3■□□□□ 0.36
TRIM28-205ENST00000595028 ANO3Q9BYT9 981 aa17.3■□□□□ 0.36
TRIM28-205ENST00000595028 WNT8AQ9H1J5 351 aa17.3■□□□□ 0.36
TRIM28-205ENST00000595028 NCOA5Q9HCD5 579 aaKnown RBP17.3■□□□□ 0.36
TRIM28-205ENST00000595028 XIRP2A4UGR9 3374 aa17.29■□□□□ 0.36
TRIM28-205ENST00000595028 HAS3O00219 553 aa17.29■□□□□ 0.36
TRIM28-205ENST00000595028 FOSP01100 380 aaPredicted RBP17.29■□□□□ 0.36
TRIM28-205ENST00000595028 ITGB5P18084 799 aa17.29■□□□□ 0.36
TRIM28-205ENST00000595028 CCT2P78371 535 aaKnown RBP17.29■□□□□ 0.36
TRIM28-205ENST00000595028 MFSD10Q14728 455 aa17.29■□□□□ 0.36
TRIM28-205ENST00000595028 PKN1Q16512 942 aa17.29■□□□□ 0.36
TRIM28-205ENST00000595028 CYFIP1Q7L576 1253 aa17.29■□□□□ 0.36
TRIM28-205ENST00000595028 CCDC12Q8WUD4 166 aaPredicted RBP17.29■□□□□ 0.36
TRIM28-205ENST00000595028 PPM1EQ8WY54 764 aa17.29■□□□□ 0.36
TRIM28-205ENST00000595028 CDHR1Q96JP9 859 aa17.29■□□□□ 0.36
TRIM28-205ENST00000595028 PGBD1Q96JS3 809 aa17.29■□□□□ 0.36
TRIM28-205ENST00000595028 ASB2Q96Q27 587 aa17.29■□□□□ 0.36
TRIM28-205ENST00000595028 BCAS3Q9H6U6 928 aa17.29■□□□□ 0.36
TRIM28-205ENST00000595028 PDRG1Q9NUG6 133 aa17.29■□□□□ 0.36
TRIM28-205ENST00000595028 UBIAD1Q9Y5Z9 338 aa17.29■□□□□ 0.36
TRIM28-205ENST00000595028 SCN5AQ14524 2016 aa17.29■□□□□ 0.36
TRIM28-205ENST00000595028 TRIP12Q14669 1992 aaPredicted RBP17.28■□□□□ 0.36
TRIM28-205ENST00000595028 NOP56O00567 594 aaKnown RBP17.28■□□□□ 0.36
TRIM28-205ENST00000595028 EIF5BO60841 1220 aaKnown RBP17.28■□□□□ 0.36
TRIM28-205ENST00000595028 DNAJB2P25686 324 aa17.28■□□□□ 0.36
TRIM28-205ENST00000595028 CLK2P49760 499 aaKnown RBP17.28■□□□□ 0.36
TRIM28-205ENST00000595028 AKAP17AQ02040 695 aaKnown RBP17.28■□□□□ 0.36
TRIM28-205ENST00000595028 KIAA0753Q2KHM9 967 aa17.28■□□□□ 0.36
TRIM28-205ENST00000595028 PSRC1Q6PGN9 363 aaPredicted RBP17.28■□□□□ 0.36
TRIM28-205ENST00000595028 ZNF274Q96GC6 653 aaPredicted RBP17.28■□□□□ 0.36
TRIM28-205ENST00000595028 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.28■□□□□ 0.366e-14■□□□□ 9.5
TRIM28-205ENST00000595028 ALG1Q9BT22 464 aa17.28■□□□□ 0.36
TRIM28-205ENST00000595028 SLC26A6Q9BXS9 759 aa17.28■□□□□ 0.36
TRIM28-205ENST00000595028 ZMYND12Q9H0C1 365 aa17.28■□□□□ 0.36
TRIM28-205ENST00000595028 IL23AQ9NPF7 189 aa17.28■□□□□ 0.36
TRIM28-205ENST00000595028 GTF2IRD1Q9UHL9 959 aa17.28■□□□□ 0.36
TRIM28-205ENST00000595028 NOD1Q9Y239 953 aa17.28■□□□□ 0.36
TRIM28-205ENST00000595028 REV3LO60673 3130 aa17.28■□□□□ 0.36
TRIM28-205ENST00000595028 PPFIA3O75145 1194 aa17.27■□□□□ 0.36
TRIM28-205ENST00000595028 LGALS2P05162 132 aa17.27■□□□□ 0.36
TRIM28-205ENST00000595028 KCNA2P16389 499 aa17.27■□□□□ 0.36
TRIM28-205ENST00000595028 SREBF1P36956 1147 aa17.27■□□□□ 0.36
TRIM28-205ENST00000595028 CCL23P55773 120 aa17.27■□□□□ 0.36
TRIM28-205ENST00000595028 MTMR1Q13613 665 aa17.27■□□□□ 0.36
TRIM28-205ENST00000595028 PTGISQ16647 500 aa17.27■□□□□ 0.36
TRIM28-205ENST00000595028 GDF6Q6KF10 455 aaPredicted RBP17.27■□□□□ 0.36
TRIM28-205ENST00000595028 C16orf59Q7L2K0 433 aa17.27■□□□□ 0.36
TRIM28-205ENST00000595028 C7orf31Q8N865 590 aa17.27■□□□□ 0.36
TRIM28-205ENST00000595028 GIMAP8Q8ND71 665 aaPredicted RBP17.27■□□□□ 0.36
TRIM28-205ENST00000595028 CCDC148Q8NFR7 591 aa17.27■□□□□ 0.36
TRIM28-205ENST00000595028 IL17RAQ96F46 866 aa17.27■□□□□ 0.36
TRIM28-205ENST00000595028 CTAGE1Q96RT6 745 aa17.27■□□□□ 0.36
TRIM28-205ENST00000595028 UHRF1Q96T88 793 aaPredicted RBP17.27■□□□□ 0.36
TRIM28-205ENST00000595028 GPR20Q99678 358 aa17.27■□□□□ 0.36
TRIM28-205ENST00000595028 C16orf70Q9BSU1 422 aa17.27■□□□□ 0.36
TRIM28-205ENST00000595028 ZNF576Q9H609 170 aa17.27■□□□□ 0.36
TRIM28-205ENST00000595028 JADE2Q9NQC1 790 aa17.27■□□□□ 0.36
TRIM28-205ENST00000595028 TMEM260Q9NX78 707 aa17.27■□□□□ 0.36
TRIM28-205ENST00000595028 THEGQ9P2T0 379 aa17.27■□□□□ 0.36
TRIM28-205ENST00000595028 HDAC6Q9UBN7 1215 aa17.27■□□□□ 0.36
TRIM28-205ENST00000595028 MYO9BQ13459 2157 aa17.26■□□□□ 0.35
TRIM28-205ENST00000595028 PITPNM1O00562 1244 aa17.26■□□□□ 0.35
TRIM28-205ENST00000595028 ACRP10323 421 aa17.26■□□□□ 0.35
TRIM28-205ENST00000595028 TMEM240Q5SV17 173 aa17.26■□□□□ 0.35
TRIM28-205ENST00000595028 REXO1Q8N1G1 1221 aaKnown RBP17.26■□□□□ 0.35
TRIM28-205ENST00000595028 LARP6Q9BRS8 491 aaKnown RBP17.26■□□□□ 0.35
TRIM28-205ENST00000595028 C6orf50Q9HD87 102 aa17.26■□□□□ 0.35
TRIM28-205ENST00000595028 TELO2Q9Y4R8 837 aa17.26■□□□□ 0.35
TRIM28-205ENST00000595028 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.25■□□□□ 0.35
TRIM28-205ENST00000595028 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.25■□□□□ 0.35
TRIM28-205ENST00000595028 CPLX1O14810 134 aa17.25■□□□□ 0.35
TRIM28-205ENST00000595028 MAFGO15525 162 aa17.25■□□□□ 0.35
TRIM28-205ENST00000595028 ATP9AO75110 1047 aa17.25■□□□□ 0.35
TRIM28-205ENST00000595028 SP4Q02446 784 aa17.25■□□□□ 0.35
TRIM28-205ENST00000595028 STK3Q13188 491 aa17.25■□□□□ 0.35
TRIM28-205ENST00000595028 BFSP2Q13515 415 aa17.25■□□□□ 0.35
TRIM28-205ENST00000595028 JAKMIP3Q5VZ66 844 aa17.25■□□□□ 0.35
TRIM28-205ENST00000595028 TRIM22Q8IYM9 498 aa17.25■□□□□ 0.35
TRIM28-205ENST00000595028 CAGE1Q8TC20 777 aa17.25■□□□□ 0.35
TRIM28-205ENST00000595028 SCLYQ96I15 445 aa17.25■□□□□ 0.35
TRIM28-205ENST00000595028 MXRA8Q9BRK3 442 aa17.25■□□□□ 0.35
TRIM28-205ENST00000595028 PKD2L1Q9P0L9 805 aa17.25■□□□□ 0.35
TRIM28-205ENST00000595028 H3BRB1 525 aa17.24■□□□□ 0.35
TRIM28-205ENST00000595028 ADAMTS3O15072 1205 aa17.24■□□□□ 0.35
TRIM28-205ENST00000595028 GNA11P29992 359 aa17.24■□□□□ 0.35
TRIM28-205ENST00000595028 MRPS5P82675 430 aaKnown RBP17.24■□□□□ 0.35
TRIM28-205ENST00000595028 ARHGAP4P98171 946 aa17.24■□□□□ 0.35
TRIM28-205ENST00000595028 CEP55Q53EZ4 464 aa17.24■□□□□ 0.35
TRIM28-205ENST00000595028 RASIP1Q5U651 963 aa17.24■□□□□ 0.35
TRIM28-205ENST00000595028 CPLX2Q6PUV4 134 aaKnown RBP17.24■□□□□ 0.35
TRIM28-205ENST00000595028 ZNF365Q70YC5 407 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms