RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 PHC3Q8NDX5 983 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 NUP43Q8NFH3 380 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 ITSN1Q15811 1721 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 E9PCH4 1651 aa2.5□□□□□ -2.01
SMCHD1-211ENST00000584897 LY75O60449 1722 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 RIMS2Q9UQ26 1411 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 KLF4O43474 513 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 HTR3BO95264 441 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 PF4P02776 101 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 NCAM1P13591 858 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 PURAQ00577 322 aaKnown RBP2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 MESP2Q0VG99 397 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 NCAPHQ15003 741 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 WDR89Q96FK6 387 aaPredicted RBP2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 APBA2Q99767 749 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 METTL14Q9HCE5 456 aaKnown RBP2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 EFR3BQ9Y2G0 817 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 SBNO1A3KN83 1393 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 PPLO60437 1756 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 LTBP1Q14766 1721 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 K7ESM1 405 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 KIF3BO15066 747 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 SIGLEC6O43699 453 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 ATE1O95260 518 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 S100BP04271 92 aaPredicted RBP2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 C1QTNF9P0C862 333 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 EIF4A3P38919 411 aaKnown RBP2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 RTP1P59025 263 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 OS9Q13438 667 aaPredicted RBP2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 SEPT6Q14141 434 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 ANKS3Q6ZW76 656 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 CCAR1Q8IX12 1150 aaKnown RBP2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 C7orf61Q8IZ16 206 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 MICAL1Q8TDZ2 1067 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 CDADC1Q9BWV3 514 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 NT5C1AQ9BXI3 368 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 PCDHA11Q9Y5I1 949 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 HSPA1AP0DMV8 641 aaKnown RBP2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 HSPA1BP0DMV9 641 aaKnown RBP2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 LARP1BQ659C4 914 aaKnown RBP2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 LGI4Q8N135 537 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 KIF2CQ99661 725 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 NUP155O75694 1391 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 F6X3S4 739 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 GFRA2O00451 464 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 PPFIA4O75335 1185 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 DDAH1O94760 285 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 ESR1P03372 595 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 CYBBP04839 570 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 BMP7P18075 431 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 CFPP27918 469 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 SEPHS1P49903 392 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 YBX1P67809 324 aaKnown RBP2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 PLP2Q04941 152 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 ARSHQ5FYA8 562 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 PAQR3Q6TCH7 311 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 PI16Q6UXB8 463 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 REC114Q7Z4M0 266 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 GOLM1Q8NBJ4 401 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 NETO2Q8NC67 525 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 RNF32Q9H0A6 362 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 IRF2BPLQ9H1B7 796 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 SPC25Q9HBM1 224 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 PMF1-BGLAPU3KQ54 211 aa2.49□□□□□ -2.01
SMCHD1-211ENST00000584897 SPATA31A5Q5VU36 1347 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 SPATA31A7Q8IWB4 1347 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 CLTCL1P53675 1640 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 EP400Q96L91 3159 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 IQCA1LA6NCM1 817 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 HMGB1P1B2RPK0 211 aaPredicted RBP2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 ETV2O00321 342 aaPredicted RBP2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 N4BP3O15049 544 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 CDC45O75419 566 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 HNRNPMP52272 730 aaKnown RBP eCLIP2.48□□□□□ -2.015e-7■■■■□ 26.7
SMCHD1-211ENST00000584897 ERVFRD-1P60508 538 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 MEI1Q5TIA1 1274 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 CDCP2Q5VXM1 449 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 HEATR6Q6AI08 1181 aaKnown RBP2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 BICRALQ6AI39 1079 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 GGT6Q6P531 493 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 NLRC3Q7RTR2 1065 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 DNAJB8Q8NHS0 232 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 MZB1Q8WU39 189 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 ADAMTS10Q9H324 1103 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 PHAXQ9H814 394 aaKnown RBP2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 MSL2Q9HCI7 577 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 RTEL1Q9NZ71 1219 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 SIRPGQ9P1W8 387 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 MYRFQ9Y2G1 1151 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 TNS3Q68CZ2 1445 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 PRR36Q9H6K5 1346 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 ABCC11Q96J66 1382 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 TLR3O15455 904 aaKnown RBP2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 ADRB1P08588 477 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 SOX9P48436 509 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 FAM160A1Q05DH4 1040 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 INPP5AQ14642 412 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 CBX2Q14781 532 aaPredicted RBP2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 GAB4Q2WGN9 574 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 ANKRD39Q53RE8 183 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms