RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 TMTC1Q8IUR5 882 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 FAM114A1Q8IWE2 563 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 ZNF507Q8TCN5 953 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 GTPBP4Q9BZE4 634 aaKnown RBP11.01□□□□□ -0.65
VPS53-206ENST00000570359 KCNMB3Q9NPA1 279 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 MYOZ2Q9NPC6 264 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 HERC5Q9UII4 1024 aaKnown RBP11.01□□□□□ -0.65
VPS53-206ENST00000570359 ITIH6Q6UXX5 1313 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 RASSF10A6NK89 507 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 SEC31AO94979 1220 aaKnown RBP11.01□□□□□ -0.65
VPS53-206ENST00000570359 NDUFA10O95299 355 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 ALAS1P13196 640 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 RRAGAQ7L523 313 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 CCDC65Q8IXS2 484 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 ANKRD13CQ8N6S4 541 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 ETNPPLQ8TBG4 499 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 CAPZA3Q96KX2 299 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 PURBQ96QR8 312 aaKnown RBP11.01□□□□□ -0.65
VPS53-206ENST00000570359 REEP2Q9BRK0 252 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 WDR18Q9BV38 432 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 MRIQ9BWK5 157 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 NDST4Q9H3R1 872 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 ZNHIT6Q9NWK9 470 aaKnown RBP11.01□□□□□ -0.65
VPS53-206ENST00000570359 PIM2Q9P1W9 311 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 HDAC6Q9UBN7 1215 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 EPN1Q9Y6I3 576 aaPredicted RBP11.01□□□□□ -0.65
VPS53-206ENST00000570359 DUSP10Q9Y6W6 482 aa11.01□□□□□ -0.65
VPS53-206ENST00000570359 KDM3AQ9Y4C1 1321 aa11□□□□□ -0.65
VPS53-206ENST00000570359 GREB1LQ9C091 1923 aaPredicted RBP11□□□□□ -0.65
VPS53-206ENST00000570359 CLIC2O15247 247 aa11□□□□□ -0.65
VPS53-206ENST00000570359 MYBP10242 640 aa11□□□□□ -0.65
VPS53-206ENST00000570359 INPP5BP32019 993 aa11□□□□□ -0.65
VPS53-206ENST00000570359 EPS15P42566 896 aa11□□□□□ -0.65
VPS53-206ENST00000570359 DCAF17Q5H9S7 520 aaPredicted RBP11□□□□□ -0.65
VPS53-206ENST00000570359 CCDC122Q5T0U0 273 aa11□□□□□ -0.65
VPS53-206ENST00000570359 LRCH2Q5VUJ6 765 aa11□□□□□ -0.65
VPS53-206ENST00000570359 TCERG1LQ5VWI1 586 aa11□□□□□ -0.65
VPS53-206ENST00000570359 CIAPIN1Q6FI81 312 aa11□□□□□ -0.65
VPS53-206ENST00000570359 WDR59Q6PJI9 974 aa11□□□□□ -0.65
VPS53-206ENST00000570359 SLFN12Q8IYM2 578 aa11□□□□□ -0.65
VPS53-206ENST00000570359 HINFPQ9BQA5 517 aa11□□□□□ -0.65
VPS53-206ENST00000570359 NAA15Q9BXJ9 866 aaKnown RBP11□□□□□ -0.65
VPS53-206ENST00000570359 NT5C3AQ9H0P0 336 aa11□□□□□ -0.65
VPS53-206ENST00000570359 TAOK3Q9H2K8 898 aa11□□□□□ -0.65
VPS53-206ENST00000570359 DEF6Q9H4E7 631 aa11□□□□□ -0.65
VPS53-206ENST00000570359 L2HGDHQ9H9P8 463 aa11□□□□□ -0.65
VPS53-206ENST00000570359 RAVER2Q9HCJ3 691 aaKnown RBP11□□□□□ -0.65
VPS53-206ENST00000570359 CCPG1Q9ULG6 757 aa11□□□□□ -0.65
VPS53-206ENST00000570359 DNM3Q9UQ16 869 aa11□□□□□ -0.65
VPS53-206ENST00000570359 ATRNL1Q5VV63 1379 aa11□□□□□ -0.65
VPS53-206ENST00000570359 GCOM1H8Y6P7 765 aaPredicted RBP11□□□□□ -0.65
VPS53-206ENST00000570359 POLR2MP0CAP2 368 aa11□□□□□ -0.65
VPS53-206ENST00000570359 USP11P51784 963 aa11□□□□□ -0.65
VPS53-206ENST00000570359 KCNA1Q09470 495 aa11□□□□□ -0.65
VPS53-206ENST00000570359 AP3B2Q13367 1082 aa11□□□□□ -0.65
VPS53-206ENST00000570359 VWA3BQ502W6 1294 aa11□□□□□ -0.65
VPS53-206ENST00000570359 TDRD12Q587J7 1177 aaKnown RBP11□□□□□ -0.65
VPS53-206ENST00000570359 ARSHQ5FYA8 562 aa11□□□□□ -0.65
VPS53-206ENST00000570359 HAUS3Q68CZ6 603 aa11□□□□□ -0.65
VPS53-206ENST00000570359 CENPPQ6IPU0 288 aa11□□□□□ -0.65
VPS53-206ENST00000570359 CACNA2D4Q7Z3S7 1137 aa11□□□□□ -0.65
VPS53-206ENST00000570359 LENG9Q96B70 501 aa11□□□□□ -0.65
VPS53-206ENST00000570359 HOOK2Q96ED9 719 aa11□□□□□ -0.65
VPS53-206ENST00000570359 DYDC2Q96IM9 177 aa11□□□□□ -0.65
VPS53-206ENST00000570359 PSMB7Q99436 277 aa11□□□□□ -0.65
VPS53-206ENST00000570359 GMLQ99445 158 aa11□□□□□ -0.65
VPS53-206ENST00000570359 EIF2AK1Q9BQI3 630 aaKnown RBP11□□□□□ -0.65
VPS53-206ENST00000570359 RUSC1Q9BVN2 902 aa11□□□□□ -0.65
VPS53-206ENST00000570359 CGNQ9P2M7 1197 aaKnown RBP11□□□□□ -0.65
VPS53-206ENST00000570359 TMX2Q9Y320 296 aa11□□□□□ -0.65
VPS53-206ENST00000570359 REXO2Q9Y3B8 237 aaKnown RBP11□□□□□ -0.65
VPS53-206ENST00000570359 PVALEFA0A1B0GWK0 134 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 GOLGA6L9A6NEM1 432 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 NFIBO00712 420 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 SRGAP2O75044 1071 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 GCNT3O95395 438 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 ZSCAN20P17040 1043 aaPredicted RBP10.99□□□□□ -0.65
VPS53-206ENST00000570359 SREBF1P36956 1147 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 CAP2P40123 477 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 ORC2Q13416 577 aaPredicted RBP10.99□□□□□ -0.65
VPS53-206ENST00000570359 TRIM14Q14142 442 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 DALRD3Q5D0E6 543 aaKnown RBP10.99□□□□□ -0.65
VPS53-206ENST00000570359 LDHDQ86WU2 507 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 BANK1Q8NDB2 785 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 ERMNQ8TAM6 284 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 VCPKMTQ9H867 229 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 NHEJ1Q9H9Q4 299 aaPredicted RBP10.99□□□□□ -0.65
VPS53-206ENST00000570359 SAMM50Q9Y512 469 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 GAS7O60861 476 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 SPATA31C1P0DKV0 1188 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 ARP10275 920 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 POLD1P28340 1107 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 SP4Q02446 784 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 R3HDM1Q15032 1099 aaKnown RBP10.99□□□□□ -0.65
VPS53-206ENST00000570359 DLK2Q6UY11 383 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 GUF1Q8N442 669 aaKnown RBP10.99□□□□□ -0.65
VPS53-206ENST00000570359 PSMD1Q99460 953 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 EMILIN3Q9NT22 766 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 CAPN11Q9UMQ6 739 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 CTDP1Q9Y5B0 961 aaPredicted RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms