RNA–Protein interactions for RNA: ENST00000561391.1

SPG11-225, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 629 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-225ENST00000561391 HCLS1P14317 486 aaPredicted RBP4.29□□□□□ -1.72
SPG11-225ENST00000561391 FOSL2P15408 326 aa4.29□□□□□ -1.72
SPG11-225ENST00000561391 GARTP22102 1010 aa4.29□□□□□ -1.72
SPG11-225ENST00000561391 TNNT2P45379 298 aaPredicted RBP4.29□□□□□ -1.72
SPG11-225ENST00000561391 CRKP46108 304 aa4.29□□□□□ -1.72
SPG11-225ENST00000561391 INHBEP58166 350 aa4.29□□□□□ -1.72
SPG11-225ENST00000561391 ETF1P62495 437 aaKnown RBP4.29□□□□□ -1.72
SPG11-225ENST00000561391 RPL6Q02878 288 aaKnown RBP4.29□□□□□ -1.72
SPG11-225ENST00000561391 CWF19L2Q2TBE0 894 aaKnown RBP4.29□□□□□ -1.72
SPG11-225ENST00000561391 PLEKHO1Q53GL0 409 aaPredicted RBP4.29□□□□□ -1.72
SPG11-225ENST00000561391 NAALADL2Q58DX5 795 aa4.29□□□□□ -1.72
SPG11-225ENST00000561391 FBXW10Q5XX13 1052 aa4.29□□□□□ -1.72
SPG11-225ENST00000561391 ZNF530Q6P9A1 599 aaPredicted RBP4.29□□□□□ -1.72
SPG11-225ENST00000561391 LCNL1Q6ZST4 164 aa4.29□□□□□ -1.72
SPG11-225ENST00000561391 CCDC84Q86UT8 332 aaPredicted RBP4.29□□□□□ -1.72
SPG11-225ENST00000561391 VPS37DQ86XT2 251 aa4.29□□□□□ -1.72
SPG11-225ENST00000561391 USP38Q8NB14 1042 aa4.29□□□□□ -1.72
SPG11-225ENST00000561391 PPM1EQ8WY54 764 aa4.29□□□□□ -1.72
SPG11-225ENST00000561391 DPF2Q92785 391 aa4.29□□□□□ -1.72
SPG11-225ENST00000561391 NKD1Q969G9 470 aa4.29□□□□□ -1.72
SPG11-225ENST00000561391 GPRASP2Q96D09 838 aa4.29□□□□□ -1.72
SPG11-225ENST00000561391 FANCD2OSQ96PS1 177 aa4.29□□□□□ -1.72
SPG11-225ENST00000561391 UHRF1Q96T88 793 aaPredicted RBP4.29□□□□□ -1.72
SPG11-225ENST00000561391 NT5C1AQ9BXI3 368 aa4.29□□□□□ -1.72
SPG11-225ENST00000561391 TMX4Q9H1E5 349 aaPredicted RBP4.29□□□□□ -1.72
SPG11-225ENST00000561391 PIDD1Q9HB75 910 aa4.29□□□□□ -1.72
SPG11-225ENST00000561391 CACNA2D2Q9NY47 1150 aa4.29□□□□□ -1.72
SPG11-225ENST00000561391 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.29□□□□□ -1.72
SPG11-225ENST00000561391 MRC1P22897 1456 aa4.29□□□□□ -1.72
SPG11-225ENST00000561391 TJP1Q07157 1748 aa4.29□□□□□ -1.72
SPG11-225ENST00000561391 RTL1A6NKG5 1358 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 TTC28Q96AY4 2481 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 MANSC4A6NHS7 340 aaPredicted RBP4.28□□□□□ -1.72
SPG11-225ENST00000561391 PSMD14O00487 310 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 TMPRSS2O15393 492 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 KRT37O76014 449 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 CAMTA2O94983 1202 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 STARD3NLO95772 234 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 DNAJA1P31689 397 aaKnown RBP4.28□□□□□ -1.72
SPG11-225ENST00000561391 CDK5R2Q13319 367 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 MPP2Q14168 576 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 TTLL4Q14679 1199 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 IFI16Q16666 785 aaKnown RBP4.28□□□□□ -1.72
SPG11-225ENST00000561391 TMEM31Q5JXX7 168 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 SCARA3Q6AZY7 606 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 OTUD7BQ6GQQ9 843 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 GK5Q6ZS86 529 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 REC114Q7Z4M0 266 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 U2AF1L4Q8WU68 220 aaKnown RBP4.28□□□□□ -1.72
SPG11-225ENST00000561391 RPGRQ92834 1020 aaKnown RBP4.28□□□□□ -1.72
SPG11-225ENST00000561391 PAWRQ96IZ0 340 aaKnown RBP4.28□□□□□ -1.72
SPG11-225ENST00000561391 ASB2Q96Q27 587 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 ARHGAP39Q9C0H5 1083 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 VPS33BQ9H267 617 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 ATXN3LQ9H3M9 355 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 BRMS1Q9HCU9 246 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 KCNQ5Q9NR82 932 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 DISC1Q9NRI5 854 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 CRIM1Q9NZV1 1036 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 EFR3BQ9Y2G0 817 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 PCDHGC5Q9Y5F6 944 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 CORINQ9Y5Q5 1042 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 SNCAIPQ9Y6H5 919 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 ZNF609O15014 1411 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 SNED1Q8TER0 1413 aa4.28□□□□□ -1.72
SPG11-225ENST00000561391 LAMA2P24043 3122 aaKnown RBP4.28□□□□□ -1.72
SPG11-225ENST00000561391 MUC3AQ02505 3323 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 GFRA2O00451 464 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 FYB1O15117 783 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 SGPL1O95470 568 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 A1BGP04217 495 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 CEACAM5P06731 702 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 PLCG1P19174 1290 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 GRK4P32298 578 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 ERVK-24P63145 666 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 C1orf141Q5JVX7 400 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 SLC23A3Q6PIS1 610 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 MPZL3Q6UWV2 235 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 SEZ6L2Q6UXD5 910 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 SYDE1Q6ZW31 735 aaPredicted RBP4.27□□□□□ -1.73
SPG11-225ENST00000561391 CYFIP1Q7L576 1253 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 C1QL4Q86Z23 238 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 CILP2Q8IUL8 1156 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 SIAH1Q8IUQ4 282 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 SUPT20HQ8NEM7 779 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 CPLX3Q8WVH0 158 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 GINM1Q9NU53 330 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 FZD1Q9UP38 647 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 NIP7Q9Y221 180 aaKnown RBP eCLIP4.27□□□□□ -1.73
SPG11-225ENST00000561391 PCDHB14Q9Y5E9 798 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 FLT4P35916 1363 aa4.27□□□□□ -1.73
SPG11-225ENST00000561391 ZNF503-AS2A6NEH8 195 aa4.26□□□□□ -1.73
SPG11-225ENST00000561391 FAM86C2PA6NEL3 165 aa4.26□□□□□ -1.73
SPG11-225ENST00000561391 NFIBO00712 420 aa4.26□□□□□ -1.73
SPG11-225ENST00000561391 PGRP06401 933 aa4.26□□□□□ -1.73
SPG11-225ENST00000561391 ITIH2P19823 946 aa4.26□□□□□ -1.73
SPG11-225ENST00000561391 NF2P35240 595 aa4.26□□□□□ -1.73
SPG11-225ENST00000561391 PIP4K2AP48426 406 aaPredicted RBP4.26□□□□□ -1.73
SPG11-225ENST00000561391 NASPP49321 788 aaPredicted RBP4.26□□□□□ -1.73
SPG11-225ENST00000561391 ZNF165P49910 485 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms