RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 PKD2L1Q9P0L9 805 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 TMX2Q9Y320 296 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 CYP3A7-CYP3A51PA0A087WV96 503 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 WNT10BO00744 389 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 TADA3O75528 432 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 CYP3A7P24462 503 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 AP3B2Q13367 1082 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 SPDYE2Q495Y8 402 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 FKBP15Q5T1M5 1219 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 TRMT1LQ7Z2T5 733 aaKnown RBP11.79□□□□□ -0.52
CUX1-217ENST00000558836 NIM1KQ8IY84 436 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 ZNF397Q8NF99 534 aaPredicted RBP11.79□□□□□ -0.52
CUX1-217ENST00000558836 IKZF4Q9H2S9 585 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 ZNF446Q9NWS9 450 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 ASTN2O75129 1339 aaPredicted RBP11.79□□□□□ -0.52
CUX1-217ENST00000558836 RCCD1A6NED2 376 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 FECHP22830 423 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 POLD1P28340 1107 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 SREBF1P36956 1147 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 SLC12A3P55017 1021 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 SLFN12Q8IYM2 578 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 GLT8D2Q9H1C3 349 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 BHMT2Q9H2M3 363 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 ZNRF3Q9ULT6 936 aa11.79□□□□□ -0.52
CUX1-217ENST00000558836 CLCN6P51797 869 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 HERVK_113P62684 666 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 SCFD1Q8WVM8 642 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 WDR18Q9BV38 432 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 LACRTQ9GZZ8 138 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 NHEJ1Q9H9Q4 299 aaPredicted RBP11.78□□□□□ -0.52
CUX1-217ENST00000558836 HDAC6Q9UBN7 1215 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 FZD1Q9UP38 647 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 C10orf71Q711Q0 1435 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 KDM3AQ9Y4C1 1321 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 CCDC40Q4G0X9 1142 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 BTNL9Q6UXG8 535 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 TPH2Q8IWU9 490 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 CPXCR1Q8N123 301 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 AGBL1Q96MI9 1066 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 PSMD1Q99460 953 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 GOPCQ9HD26 462 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 NLRC4Q9NPP4 1024 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 HOMER2Q9NSB8 354 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 EMILIN3Q9NT22 766 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 PCDHA2Q9Y5H9 948 aa11.78□□□□□ -0.52
CUX1-217ENST00000558836 DDX39AO00148 427 aaKnown RBP11.77□□□□□ -0.52
CUX1-217ENST00000558836 SEC31AO94979 1220 aaKnown RBP11.77□□□□□ -0.52
CUX1-217ENST00000558836 KCNA1Q09470 495 aa11.77□□□□□ -0.52
CUX1-217ENST00000558836 SF3B2Q13435 895 aaKnown RBP11.77□□□□□ -0.52
CUX1-217ENST00000558836 ENOX2Q16206 610 aaKnown RBP11.77□□□□□ -0.52
CUX1-217ENST00000558836 CCDC122Q5T0U0 273 aa11.77□□□□□ -0.52
CUX1-217ENST00000558836 RRAGAQ7L523 313 aa11.77□□□□□ -0.52
CUX1-217ENST00000558836 CCDC65Q8IXS2 484 aa11.77□□□□□ -0.52
CUX1-217ENST00000558836 MBOAT7Q96N66 472 aa11.77□□□□□ -0.52
CUX1-217ENST00000558836 FEZ1Q99689 392 aa11.77□□□□□ -0.52
CUX1-217ENST00000558836 REEP2Q9BRK0 252 aa11.77□□□□□ -0.52
CUX1-217ENST00000558836 ZNF341Q9BYN7 854 aa11.77□□□□□ -0.52
CUX1-217ENST00000558836 DNM3Q9UQ16 869 aa11.77□□□□□ -0.52
CUX1-217ENST00000558836 PRPF6O94906 941 aaKnown RBP11.77□□□□□ -0.53
CUX1-217ENST00000558836 INPP5BP32019 993 aa11.77□□□□□ -0.53
CUX1-217ENST00000558836 CAP2P40123 477 aa11.77□□□□□ -0.53
CUX1-217ENST00000558836 LRRC63Q05C16 580 aa11.77□□□□□ -0.53
CUX1-217ENST00000558836 Q4G0T1 1027 aa11.77□□□□□ -0.53
CUX1-217ENST00000558836 HYIQ5T013 277 aa11.77□□□□□ -0.53
CUX1-217ENST00000558836 PRAMEF18Q5VWM3 479 aa11.77□□□□□ -0.53
CUX1-217ENST00000558836 HAUS3Q68CZ6 603 aa11.77□□□□□ -0.53
CUX1-217ENST00000558836 TSG101Q99816 390 aa11.77□□□□□ -0.53
CUX1-217ENST00000558836 RUSC1Q9BVN2 902 aa11.77□□□□□ -0.53
CUX1-217ENST00000558836 LRRC27Q9C0I9 530 aa11.77□□□□□ -0.53
CUX1-217ENST00000558836 ZNHIT6Q9NWK9 470 aaKnown RBP11.77□□□□□ -0.53
CUX1-217ENST00000558836 MACROD2A1Z1Q3 448 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 CTAGE9A4FU28 777 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 SRGAP2O75044 1071 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 ZBED6P86452 979 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 FKBP3Q00688 224 aaKnown RBP11.76□□□□□ -0.53
CUX1-217ENST00000558836 SEMA3FQ13275 785 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 GIT2Q14161 759 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 RASA3Q14644 834 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 MAN2A1Q16706 1144 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 SAMD7Q7Z3H4 446 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 KIAA1328Q86T90 577 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 SFR1Q86XK3 245 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 ERGIC2Q96RQ1 377 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 EIF2AK1Q9BQI3 630 aaKnown RBP11.76□□□□□ -0.53
CUX1-217ENST00000558836 VAV3Q9UKW4 847 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 SIK3Q9Y2K2 1263 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 IGLV3-22A0A075B6J6 115 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 EFCAB8A8MWE9 144 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 GCOM1H8Y6P7 765 aaPredicted RBP11.76□□□□□ -0.53
CUX1-217ENST00000558836 ZNF263O14978 683 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 FOSP01100 380 aaPredicted RBP11.76□□□□□ -0.53
CUX1-217ENST00000558836 POLR2MP0CAP2 368 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 MYBP10242 640 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 ZSCAN20P17040 1043 aaPredicted RBP11.76□□□□□ -0.53
CUX1-217ENST00000558836 RPA1P27694 616 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 PPP1R2P41236 205 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 PSMD2Q13200 908 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 COBLL1Q53SF7 1204 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 KSR1Q8IVT5 923 aa11.76□□□□□ -0.53
CUX1-217ENST00000558836 NAP1L4Q99733 375 aaKnown RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms