RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 C4orf32Q8N8J7 132 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 SEC16BQ96JE7 1060 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 NEUROG2Q9H2A3 272 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 L3MBTL1Q9Y468 752 aa12.43□□□□□ -0.42
LDLR-208ENST00000558518 MEIS1O00470 390 aa12.42□□□□□ -0.42
LDLR-208ENST00000558518 CYTH3O43739 400 aa12.42□□□□□ -0.42
LDLR-208ENST00000558518 FAM107AO95990 144 aa12.42□□□□□ -0.42
LDLR-208ENST00000558518 CYP19A1P11511 503 aaPredicted RBP12.42□□□□□ -0.42
LDLR-208ENST00000558518 ZKSCAN8Q15776 578 aaPredicted RBP12.42□□□□□ -0.42
LDLR-208ENST00000558518 TMEM266Q2M3C6 531 aa12.42□□□□□ -0.42
LDLR-208ENST00000558518 GKAP1Q5VSY0 366 aaPredicted RBP12.42□□□□□ -0.42
LDLR-208ENST00000558518 KDM7AQ6ZMT4 941 aa12.42□□□□□ -0.42
LDLR-208ENST00000558518 KCNK18Q7Z418 384 aa12.42□□□□□ -0.42
LDLR-208ENST00000558518 NEK8Q86SG6 692 aa12.42□□□□□ -0.42
LDLR-208ENST00000558518 HVCN1Q96D96 273 aa12.42□□□□□ -0.42
LDLR-208ENST00000558518 PICALMQ13492 652 aa12.42□□□□□ -0.42
LDLR-208ENST00000558518 KCNB1Q14721 858 aa12.42□□□□□ -0.42
LDLR-208ENST00000558518 C3orf67Q6ZVT6 689 aa12.42□□□□□ -0.42
LDLR-208ENST00000558518 IQCKQ8N0W5 287 aa12.42□□□□□ -0.42
LDLR-208ENST00000558518 LRRC47Q8N1G4 583 aaKnown RBP12.42□□□□□ -0.42
LDLR-208ENST00000558518 CELF1Q92879 486 aaKnown RBP12.42□□□□□ -0.42
LDLR-208ENST00000558518 FGFBP2Q9BYJ0 223 aa12.42□□□□□ -0.42
LDLR-208ENST00000558518 C6orf50Q9HD87 102 aa12.42□□□□□ -0.42
LDLR-208ENST00000558518 BMP2KQ9NSY1 1161 aaPredicted RBP12.42□□□□□ -0.42
LDLR-208ENST00000558518 BTG4Q9NY30 223 aa12.42□□□□□ -0.42
LDLR-208ENST00000558518 ARPP21Q9UBL0 812 aaPredicted RBP12.42□□□□□ -0.42
LDLR-208ENST00000558518 CNOT8Q9UFF9 292 aaKnown RBP12.42□□□□□ -0.42
LDLR-208ENST00000558518 FGFR1OPO95684 399 aaKnown RBP12.42□□□□□ -0.42
LDLR-208ENST00000558518 PLS1Q14651 629 aa12.42□□□□□ -0.42
LDLR-208ENST00000558518 TMED8Q6PL24 325 aaPredicted RBP12.42□□□□□ -0.42
LDLR-208ENST00000558518 MYOCDQ8IZQ8 938 aa12.42□□□□□ -0.42
LDLR-208ENST00000558518 ERGIC2Q96RQ1 377 aa12.42□□□□□ -0.42
LDLR-208ENST00000558518 TAF1DQ9H5J8 278 aaPredicted RBP12.42□□□□□ -0.42
LDLR-208ENST00000558518 ANKIB1Q9P2G1 1089 aa12.42□□□□□ -0.42
LDLR-208ENST00000558518 E9PMD0 336 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 F8W031 263 aaPredicted RBP12.41□□□□□ -0.42
LDLR-208ENST00000558518 SLC9A1P19634 815 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 REXO1Q8N1G1 1221 aaKnown RBP12.41□□□□□ -0.42
LDLR-208ENST00000558518 ANKRD42Q8N9B4 389 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 RAPGEF5Q92565 580 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 ZNF512BQ96KM6 892 aaPredicted RBP12.41□□□□□ -0.42
LDLR-208ENST00000558518 PAIP2Q9BPZ3 127 aaKnown RBP12.41□□□□□ -0.42
LDLR-208ENST00000558518 VCPKMTQ9H867 229 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 TPX2Q9ULW0 747 aaKnown RBP12.41□□□□□ -0.42
LDLR-208ENST00000558518 SIK3Q9Y2K2 1263 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 PCDHB13Q9Y5F0 798 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 BAZ2AQ9UIF9 1905 aaKnown RBP12.41□□□□□ -0.42
LDLR-208ENST00000558518 SPDYE3A6NKU9 549 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 HMGB1P1B2RPK0 211 aaPredicted RBP12.41□□□□□ -0.42
LDLR-208ENST00000558518 CLIC2O15247 247 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 KIF2BQ8N4N8 673 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 RDH13Q8NBN7 331 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 PTPN22Q9Y2R2 807 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 LEMD3Q9Y2U8 911 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 MARF1Q9Y4F3 1742 aaKnown RBP12.41□□□□□ -0.42
LDLR-208ENST00000558518 FNTAP49354 379 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 SKOR1P84550 965 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 ADAM9Q13443 819 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 ERFEQ4G0M1 354 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 KCNV2Q8TDN2 545 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 PIK3R5Q8WYR1 880 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 GLG1Q92896 1179 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 OSBPL7Q9BZF2 842 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 PANK4Q9NVE7 773 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 SNX24Q9Y343 169 aa12.41□□□□□ -0.42
LDLR-208ENST00000558518 SLC37A4O43826 429 aa12.4□□□□□ -0.42
LDLR-208ENST00000558518 TLR2O60603 784 aa12.4□□□□□ -0.42
LDLR-208ENST00000558518 FGGP02679 453 aa12.4□□□□□ -0.42
LDLR-208ENST00000558518 SLC16A2P36021 539 aa12.4□□□□□ -0.42
LDLR-208ENST00000558518 MAP2K1Q02750 393 aaPredicted RBP12.4□□□□□ -0.42
LDLR-208ENST00000558518 ITGB3BPQ13352 177 aaPredicted RBP12.4□□□□□ -0.42
LDLR-208ENST00000558518 ACCSLQ4AC99 568 aa12.4□□□□□ -0.42
LDLR-208ENST00000558518 SWT1Q5T5J6 900 aaKnown RBP12.4□□□□□ -0.42
LDLR-208ENST00000558518 MICAL1Q8TDZ2 1067 aa12.4□□□□□ -0.42
LDLR-208ENST00000558518 ZNF384Q8TF68 577 aa12.4□□□□□ -0.42
LDLR-208ENST00000558518 FAM84BQ96KN1 310 aaPredicted RBP12.4□□□□□ -0.42
LDLR-208ENST00000558518 KCNK9Q9NPC2 374 aa12.4□□□□□ -0.42
LDLR-208ENST00000558518 IL17RBQ9NRM6 502 aa12.4□□□□□ -0.42
LDLR-208ENST00000558518 KIAA1024Q9UPX6 916 aa12.4□□□□□ -0.42
LDLR-208ENST00000558518 NOC2LQ9Y3T9 749 aaKnown RBP12.4□□□□□ -0.42
LDLR-208ENST00000558518 COL4A3BPQ9Y5P4 624 aa12.4□□□□□ -0.42
LDLR-208ENST00000558518 GRID2IPA4D2P6 1211 aa12.4□□□□□ -0.42
LDLR-208ENST00000558518 SFI1A8K8P3 1242 aa12.4□□□□□ -0.42
LDLR-208ENST00000558518 CDC37Q16543 378 aaPredicted RBP12.4□□□□□ -0.42
LDLR-208ENST00000558518 FAM26FQ5R3K3 315 aa12.4□□□□□ -0.42
LDLR-208ENST00000558518 RCSD1Q6JBY9 416 aa12.4□□□□□ -0.42
LDLR-208ENST00000558518 SH3RF3Q8TEJ3 882 aaPredicted RBP12.4□□□□□ -0.42
LDLR-208ENST00000558518 LRRC45Q96CN5 670 aa12.4□□□□□ -0.42
LDLR-208ENST00000558518 MRRFQ96E11 262 aaKnown RBP12.4□□□□□ -0.42
LDLR-208ENST00000558518 TMEM47Q9BQJ4 181 aa12.4□□□□□ -0.42
LDLR-208ENST00000558518 FAM167BQ9BTA0 163 aa12.4□□□□□ -0.42
LDLR-208ENST00000558518 MPHOSPH10O00566 681 aaKnown RBP12.39□□□□□ -0.43
LDLR-208ENST00000558518 GFPT2O94808 682 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 PPP2R2AP63151 447 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 PTK2Q05397 1052 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 ZNF844Q08AG5 666 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 KCNMA1Q12791 1236 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 ARHGAP44Q17R89 818 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 TEX2Q8IWB9 1127 aa12.39□□□□□ -0.43
LDLR-208ENST00000558518 USP38Q8NB14 1042 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms