RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 FAM126BQ8IXS8 530 aa9.88□□□□□ -0.83
USP3-208ENST00000558285 SLC43A3Q8NBI5 491 aa9.88□□□□□ -0.83
USP3-208ENST00000558285 CAGE1Q8TC20 777 aa9.88□□□□□ -0.83
USP3-208ENST00000558285 GPKOWQ92917 476 aaPredicted RBP eCLIP9.88□□□□□ -0.83
USP3-208ENST00000558285 SLC26A6Q9BXS9 759 aa9.88□□□□□ -0.83
USP3-208ENST00000558285 HIPK3Q9H422 1215 aa9.88□□□□□ -0.83
USP3-208ENST00000558285 CTAGE5O15320 804 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 ADCY6O43306 1168 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 ADD1P35611 737 aaKnown RBP9.87□□□□□ -0.83
USP3-208ENST00000558285 NLRP5P59047 1200 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 FAAP100Q0VG06 881 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 TRIM29Q14134 588 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 HSP90AA2PQ14568 343 aaPredicted RBP9.87□□□□□ -0.83
USP3-208ENST00000558285 LRIT3Q3SXY7 679 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 MYSM1Q5VVJ2 828 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 SESTD1Q86VW0 696 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 BADQ92934 168 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 NAP1L4Q99733 375 aaKnown RBP9.87□□□□□ -0.83
USP3-208ENST00000558285 BACH2Q9BYV9 841 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 UPF3BQ9BZI7 483 aaKnown RBP9.87□□□□□ -0.83
USP3-208ENST00000558285 AZI2Q9H6S1 392 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 WDR70Q9NW82 654 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 HTTP42858 3142 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 STXBP3O00186 592 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 UBA1P22314 1058 aaKnown RBP9.87□□□□□ -0.83
USP3-208ENST00000558285 CCT2P78371 535 aaKnown RBP9.87□□□□□ -0.83
USP3-208ENST00000558285 MFSD10Q14728 455 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 NBPF20Q3BBV1 942 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 L1TD1Q5T7N2 865 aaKnown RBP9.87□□□□□ -0.83
USP3-208ENST00000558285 NIPA1Q7RTP0 329 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 ANO3Q9BYT9 981 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 ZMYND12Q9H0C1 365 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 JADE2Q9NQC1 790 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 RTEL1Q9NZ71 1219 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 TBX21Q9UL17 535 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 KIF3AQ9Y496 699 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 LRRC37A2A6NM11 1700 aa9.87□□□□□ -0.83
USP3-208ENST00000558285 MCM3APO60318 1980 aa9.86□□□□□ -0.83
USP3-208ENST00000558285 SMCHD1A6NHR9 2005 aa9.86□□□□□ -0.83
USP3-208ENST00000558285 hCG_1642624A0A1W2PR95 340 aa9.86□□□□□ -0.83
USP3-208ENST00000558285 CPA1P15085 419 aa9.86□□□□□ -0.83
USP3-208ENST00000558285 CDC27P30260 824 aa9.86□□□□□ -0.83
USP3-208ENST00000558285 PSEN2P49810 448 aa9.86□□□□□ -0.83
USP3-208ENST00000558285 NFKBIBQ15653 356 aa9.86□□□□□ -0.83
USP3-208ENST00000558285 PTGISQ16647 500 aa9.86□□□□□ -0.83
USP3-208ENST00000558285 SLC35G1Q2M3R5 365 aa9.86□□□□□ -0.83
USP3-208ENST00000558285 CEP55Q53EZ4 464 aa9.86□□□□□ -0.83
USP3-208ENST00000558285 RSPH3Q86UC2 560 aa9.86□□□□□ -0.83
USP3-208ENST00000558285 RNPC3Q96LT9 517 aaKnown RBP9.86□□□□□ -0.83
USP3-208ENST00000558285 H3BRB1 525 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 CAND2O75155 1236 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 ARIH2O95376 493 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 F2P00734 622 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 CD4P01730 458 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 HSP90AA1P07900 732 aaKnown RBP9.85□□□□□ -0.83
USP3-208ENST00000558285 HOXD8P13378 290 aaPredicted RBP9.85□□□□□ -0.83
USP3-208ENST00000558285 SREBF1P36956 1147 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 SLC26A2P50443 739 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 NEK4P51957 841 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 PSMC6P62333 389 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 FUT2Q10981 343 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 UBE2SQ16763 222 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 KIAA0753Q2KHM9 967 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 FAM160B1Q5W0V3 765 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 FAM43BQ6ZT52 329 aaPredicted RBP9.85□□□□□ -0.83
USP3-208ENST00000558285 CYFIP1Q7L576 1253 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 AFAP1L1Q8TED9 768 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 SEPT1Q8WYJ6 367 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 GLG1Q92896 1179 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 COPS5Q92905 334 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 MXRA8Q9BRK3 442 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 PPP1R12CQ9BZL4 782 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 PRO3102Q9H379 93 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 SMARCAD1Q9H4L7 1026 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 TUT1Q9H6E5 874 aaKnown RBP9.85□□□□□ -0.83
USP3-208ENST00000558285 JPH1Q9HDC5 661 aaPredicted RBP9.85□□□□□ -0.83
USP3-208ENST00000558285 TBC1D22BQ9NU19 505 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 UBIAD1Q9Y5Z9 338 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 STK36Q9NRP7 1315 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 TRIM43BA6NCK2 446 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 ST18O60284 1047 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 B4GALT4O60513 344 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 EFCAB14O75071 495 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 USP11P51784 963 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 MRPS9P82933 396 aaKnown RBP9.85□□□□□ -0.83
USP3-208ENST00000558285 ARHGAP4P98171 946 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 TOB2Q14106 344 aaPredicted RBP9.85□□□□□ -0.83
USP3-208ENST00000558285 IL31RAQ8NI17 732 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 PHKBQ93100 1093 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 TRIM43Q96BQ3 446 aaPredicted RBP9.85□□□□□ -0.83
USP3-208ENST00000558285 ZSCAN31Q96LW9 406 aaPredicted RBP9.85□□□□□ -0.83
USP3-208ENST00000558285 ALG1Q9BT22 464 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 IL23AQ9NPF7 189 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 FAM217BQ9NTX9 383 aaPredicted RBP9.85□□□□□ -0.83
USP3-208ENST00000558285 ERAP1Q9NZ08 941 aa9.85□□□□□ -0.83
USP3-208ENST00000558285 DDX49Q9Y6V7 483 aaKnown RBP9.85□□□□□ -0.83
USP3-208ENST00000558285 NFASCO94856 1347 aa9.84□□□□□ -0.83
USP3-208ENST00000558285 EMSYQ7Z589 1322 aa9.84□□□□□ -0.83
USP3-208ENST00000558285 CEP290O15078 2479 aa9.84□□□□□ -0.83
USP3-208ENST00000558285 CCDC194A0A1B0GVG4 234 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms