RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ADARP55265 1226 aaKnown RBP15.06■□□□□ 0
SHMT2-226ENST00000556825 MDM2Q00987 491 aaPredicted RBP15.06■□□□□ 0
SHMT2-226ENST00000556825 BCL2A1Q16548 175 aa15.06■□□□□ 0
SHMT2-226ENST00000556825 SLC2A7Q6PXP3 512 aa15.06■□□□□ 0
SHMT2-226ENST00000556825 DAAM2Q86T65 1068 aa15.06■□□□□ 0
SHMT2-226ENST00000556825 MAP7D3Q8IWC1 876 aa15.06■□□□□ 0
SHMT2-226ENST00000556825 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.06■□□□□ 0
SHMT2-226ENST00000556825 PURBQ96QR8 312 aaKnown RBP15.06■□□□□ 0
SHMT2-226ENST00000556825 NUP88Q99567 741 aaPredicted RBP15.06■□□□□ 0
SHMT2-226ENST00000556825 TBCCD1Q9NVR7 557 aa15.06■□□□□ 0
SHMT2-226ENST00000556825 SIGLEC16A6NMB1 481 aa15.05■□□□□ 0
SHMT2-226ENST00000556825 RNF225M0QZC1 329 aaPredicted RBP15.05■□□□□ 0
SHMT2-226ENST00000556825 PLCD1P51178 756 aa15.05■□□□□ 0
SHMT2-226ENST00000556825 PDE1BQ01064 536 aa15.05■□□□□ 0
SHMT2-226ENST00000556825 MORC3Q14149 939 aa15.05■□□□□ 0
SHMT2-226ENST00000556825 SLC39A14Q15043 492 aa15.05■□□□□ 0
SHMT2-226ENST00000556825 INAQ16352 499 aa15.05■□□□□ 0
SHMT2-226ENST00000556825 OLFML2BQ68BL8 750 aa15.05■□□□□ 0
SHMT2-226ENST00000556825 THEMISQ8N1K5 641 aaPredicted RBP15.05■□□□□ 0
SHMT2-226ENST00000556825 CFAP61Q8NHU2 1237 aa15.05■□□□□ 0
SHMT2-226ENST00000556825 DQX1Q8TE96 717 aaKnown RBP15.05■□□□□ 0
SHMT2-226ENST00000556825 NACC2Q96BF6 587 aa15.05■□□□□ 0
SHMT2-226ENST00000556825 ZMAT2Q96NC0 199 aaKnown RBP15.05■□□□□ 0
SHMT2-226ENST00000556825 SETDB2Q96T68 719 aa15.05■□□□□ 0
SHMT2-226ENST00000556825 ARHGEF38Q9NXL2 777 aa15.05■□□□□ 0
SHMT2-226ENST00000556825 CPS1P31327 1500 aa15.05■□□□□ 0
SHMT2-226ENST00000556825 MYPNQ86TC9 1320 aa15.05■□□□□ -0
SHMT2-226ENST00000556825 SEMA3EO15041 775 aa15.05■□□□□ -0
SHMT2-226ENST00000556825 ACTN4O43707 911 aaKnown RBP15.05■□□□□ -0
SHMT2-226ENST00000556825 ATP9AO75110 1047 aa15.05■□□□□ -0
SHMT2-226ENST00000556825 MAGOHP61326 146 aaKnown RBP15.05■□□□□ -0
SHMT2-226ENST00000556825 NT5DC1Q5TFE4 455 aa15.05■□□□□ -0
SHMT2-226ENST00000556825 SPATA1Q5VX52 437 aa15.05■□□□□ -0
SHMT2-226ENST00000556825 SHC4Q6S5L8 630 aa15.05■□□□□ -0
SHMT2-226ENST00000556825 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.05■□□□□ -0
SHMT2-226ENST00000556825 ANKK1Q8NFD2 765 aa15.05■□□□□ -0
SHMT2-226ENST00000556825 SH3TC2Q8TF17 1288 aa15.05■□□□□ -0
SHMT2-226ENST00000556825 SREK1Q8WXA9 508 aaKnown RBP15.05■□□□□ -0
SHMT2-226ENST00000556825 MAGOHBQ96A72 148 aaKnown RBP15.05■□□□□ -0
SHMT2-226ENST00000556825 EVI5LQ96CN4 794 aa15.05■□□□□ -0
SHMT2-226ENST00000556825 TUBGCP5Q96RT8 1024 aa15.05■□□□□ -0
SHMT2-226ENST00000556825 CENPKQ9BS16 269 aa15.05■□□□□ -0
SHMT2-226ENST00000556825 KIAA1522Q9P206 1035 aaPredicted RBP15.05■□□□□ -0
SHMT2-226ENST00000556825 TIMM22Q9Y584 194 aa15.05■□□□□ -0
SHMT2-226ENST00000556825 MROH7Q68CQ1 1323 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 SURF6O75683 361 aaKnown RBP15.04■□□□□ -0
SHMT2-226ENST00000556825 POLR3DP05423 398 aaPredicted RBP15.04■□□□□ -0
SHMT2-226ENST00000556825 MYCLP1P12525 358 aaPredicted RBP15.04■□□□□ -0
SHMT2-226ENST00000556825 MYL6BP14649 208 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 NFKBIAP25963 317 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 TCF7P36402 384 aaPredicted RBP15.04■□□□□ -0
SHMT2-226ENST00000556825 HSD17B3P37058 310 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 PAFAH1B1P43034 410 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 MECOMQ03112 1051 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 DHX9Q08211 1270 aaKnown RBP15.04■□□□□ -0
SHMT2-226ENST00000556825 TMEM259Q4ZIN3 620 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 LIN52Q52LA3 116 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 KANK3Q6NY19 840 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 LRRC34Q8IZ02 419 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 PDCD7Q8N8D1 485 aaKnown RBP15.04■□□□□ -0
SHMT2-226ENST00000556825 SLC17A8Q8NDX2 589 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 NLRP3Q96P20 1036 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 NSRP1Q9H0G5 558 aaKnown RBP15.04■□□□□ -0
SHMT2-226ENST00000556825 TFR2Q9UP52 801 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 LUC7L2Q9Y383 392 aaKnown RBP15.04■□□□□ -0
SHMT2-226ENST00000556825 SLIT1O75093 1534 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 HEXIM1O94992 359 aaKnown RBP15.04■□□□□ -0
SHMT2-226ENST00000556825 TCP1P17987 556 aaKnown RBP15.04■□□□□ -0
SHMT2-226ENST00000556825 SKIV2L2P42285 1042 aaKnown RBP15.04■□□□□ -0
SHMT2-226ENST00000556825 PMS2P54278 862 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 NMIQ13287 307 aaPredicted RBP15.04■□□□□ -0
SHMT2-226ENST00000556825 CAMK2BQ13554 666 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 KPNB1Q14974 876 aaKnown RBP15.04■□□□□ -0
SHMT2-226ENST00000556825 PARP6Q2NL67 630 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 FAAH2Q6GMR7 532 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 C3orf62Q6ZUJ4 267 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 CASKIN2Q8WXE0 1202 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 ATP6V0A1Q93050 837 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 FERMT2Q96AC1 680 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 FAM227BQ96M60 508 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 HNRNPABQ99729 332 aaKnown RBP15.04■□□□□ -0
SHMT2-226ENST00000556825 BHMT2Q9H2M3 363 aa15.04■□□□□ -0
SHMT2-226ENST00000556825 POTEJP0CG39 1038 aa15.03■□□□□ -0
SHMT2-226ENST00000556825 NAT2P11245 290 aa15.03■□□□□ -0
SHMT2-226ENST00000556825 CDK17Q00537 523 aa15.03■□□□□ -0
SHMT2-226ENST00000556825 CDKAL1Q5VV42 579 aa15.03■□□□□ -0
SHMT2-226ENST00000556825 RESP18Q5W5W9 173 aa15.03■□□□□ -0
SHMT2-226ENST00000556825 PTF1AQ7RTS3 328 aa15.03■□□□□ -0
SHMT2-226ENST00000556825 OR2W6PQ8NHA6 318 aa15.03■□□□□ -0
SHMT2-226ENST00000556825 DDX12PQ92771 950 aa15.03■□□□□ -0
SHMT2-226ENST00000556825 NUDT16Q96DE0 195 aaKnown RBP15.03■□□□□ -0
SHMT2-226ENST00000556825 NUDCD1Q96RS6 583 aa15.03■□□□□ -0
SHMT2-226ENST00000556825 SH3GL1Q99961 368 aa15.03■□□□□ -0
SHMT2-226ENST00000556825 FAM114A2Q9NRY5 505 aa15.03■□□□□ -0
SHMT2-226ENST00000556825 NMRK1Q9NWW6 199 aa15.03■□□□□ -0
SHMT2-226ENST00000556825 CTDP1Q9Y5B0 961 aaPredicted RBP15.03■□□□□ -0
SHMT2-226ENST00000556825 BTBD19C9JJ37 291 aa15.02■□□□□ -0
SHMT2-226ENST00000556825 CCNB1P14635 433 aa15.02■□□□□ -0
SHMT2-226ENST00000556825 MARCKSP29966 332 aaPredicted RBP15.02■□□□□ -0
SHMT2-226ENST00000556825 VHLP40337 213 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms