RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 THRAP3Q9Y2W1 955 aaKnown RBP11.52□□□□□ -0.57
CLIP1-209ENST00000537178 ZNF233A6NK53 670 aa11.52□□□□□ -0.57
CLIP1-209ENST00000537178 HEXIM1O94992 359 aaKnown RBP11.52□□□□□ -0.57
CLIP1-209ENST00000537178 PDE6AP16499 860 aa11.52□□□□□ -0.57
CLIP1-209ENST00000537178 KIF22Q14807 665 aa11.52□□□□□ -0.57
CLIP1-209ENST00000537178 ZKSCAN8Q15776 578 aaPredicted RBP11.52□□□□□ -0.57
CLIP1-209ENST00000537178 CERKLQ49MI3 558 aaPredicted RBP11.52□□□□□ -0.57
CLIP1-209ENST00000537178 SGO2Q562F6 1265 aa11.52□□□□□ -0.57
CLIP1-209ENST00000537178 DHTKD1Q96HY7 919 aaPredicted RBP11.52□□□□□ -0.57
CLIP1-209ENST00000537178 NACC1Q96RE7 527 aa11.52□□□□□ -0.57
CLIP1-209ENST00000537178 SLC12A6Q9UHW9 1150 aa11.52□□□□□ -0.57
CLIP1-209ENST00000537178 CPSF3Q9UKF6 684 aaKnown RBP11.52□□□□□ -0.57
CLIP1-209ENST00000537178 AATKQ6ZMQ8 1374 aa11.52□□□□□ -0.57
CLIP1-209ENST00000537178 CTNND1O60716 968 aaKnown RBP11.52□□□□□ -0.57
CLIP1-209ENST00000537178 NBPF3Q9H094 633 aa11.52□□□□□ -0.57
CLIP1-209ENST00000537178 PTPN22Q9Y2R2 807 aa11.52□□□□□ -0.57
CLIP1-209ENST00000537178 CHD2O14647 1828 aaKnown RBP11.51□□□□□ -0.57
CLIP1-209ENST00000537178 F8W8V4 182 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 PSMC2P35998 433 aaKnown RBP11.51□□□□□ -0.57
CLIP1-209ENST00000537178 ATP6V1E1P36543 226 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 THOC5Q13769 683 aaKnown RBP11.51□□□□□ -0.57
CLIP1-209ENST00000537178 SLMAPQ14BN4 828 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 SLFN13Q68D06 897 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 CYP4F22Q6NT55 531 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 CCNYQ8ND76 341 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 SERPINI1Q99574 410 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 MRPL47Q9HD33 250 aaKnown RBP11.51□□□□□ -0.57
CLIP1-209ENST00000537178 NR2F2P24468 414 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 CASP14P31944 242 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 PLTPP55058 493 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 PCGF5Q86SE9 256 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 SLC35F6Q8N357 371 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 ZC3H15Q8WU90 426 aaKnown RBP11.51□□□□□ -0.57
CLIP1-209ENST00000537178 PCDHA1Q9Y5I3 950 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 EEF1B2P24534 225 aaKnown RBP11.51□□□□□ -0.57
CLIP1-209ENST00000537178 ATG16L1Q676U5 607 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 ABI1Q8IZP0 508 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 FBXO18Q8NFZ0 1043 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 SLC7A3Q8WY07 619 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 SYMPKQ92797 1274 aaKnown RBP11.51□□□□□ -0.57
CLIP1-209ENST00000537178 AK8Q96MA6 479 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 AMNQ9BXJ7 453 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 UPF3AQ9H1J1 476 aaKnown RBP11.51□□□□□ -0.57
CLIP1-209ENST00000537178 SUCLA2Q9P2R7 463 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-209ENST00000537178 ARHGEF37A1IGU5 675 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 CYP4A11Q02928 519 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 BANK1Q8NDB2 785 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 SEPT8Q92599 483 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 ANKRD36BP1Q96IX9 119 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 CCDC17Q96LX7 622 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 ZSWIM6Q9HCJ5 1215 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 EPB41L5Q9HCM4 733 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 SLC13A4Q9UKG4 626 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 PCDHA5Q9Y5H7 936 aa11.51□□□□□ -0.57
CLIP1-209ENST00000537178 A0A087WUV0 522 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-209ENST00000537178 ABCD1P33897 745 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 IL13P35225 146 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 POLA2Q14181 598 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 HP1BP3Q5SSJ5 553 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-209ENST00000537178 EP400NLQ6ZTU2 488 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 PRPF38AQ8NAV1 312 aaKnown RBP11.5□□□□□ -0.57
CLIP1-209ENST00000537178 GIPC2Q8TF65 315 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 FRMPD2Q68DX3 1309 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-209ENST00000537178 CTSWP56202 376 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 NOP14P78316 857 aaKnown RBP11.5□□□□□ -0.57
CLIP1-209ENST00000537178 FKBP3Q00688 224 aaKnown RBP11.5□□□□□ -0.57
CLIP1-209ENST00000537178 GPATCH4Q5T3I0 446 aaKnown RBP11.5□□□□□ -0.57
CLIP1-209ENST00000537178 SRRM1Q8IYB3 904 aaKnown RBP11.5□□□□□ -0.57
CLIP1-209ENST00000537178 FBXL13Q8NEE6 735 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 LARP4BQ92615 738 aaKnown RBP11.5□□□□□ -0.57
CLIP1-209ENST00000537178 SLC38A10Q9HBR0 1119 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 ANGPTL2Q9UKU9 493 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 KIAA1024Q9UPX6 916 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 ATP8A1Q9Y2Q0 1164 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 TRPA1O75762 1119 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 CHEK2O96017 543 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 HSPD1P10809 573 aaKnown RBP11.5□□□□□ -0.57
CLIP1-209ENST00000537178 EEF1DP29692 281 aaKnown RBP11.5□□□□□ -0.57
CLIP1-209ENST00000537178 DEUP1Q05D60 604 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 ART3Q13508 389 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 MAN2A1Q16706 1144 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 METTL23Q86XA0 190 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 FAM186BQ8IYM0 893 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 LRRC47Q8N1G4 583 aaKnown RBP11.5□□□□□ -0.57
CLIP1-209ENST00000537178 ZNF496Q96IT1 587 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-209ENST00000537178 AFPP02771 609 aaKnown RBP11.5□□□□□ -0.57
CLIP1-209ENST00000537178 NDUFA8P51970 172 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 SPOPLQ6IQ16 392 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 CMTR1Q8N1G2 835 aaKnown RBP11.5□□□□□ -0.57
CLIP1-209ENST00000537178 PBKQ96KB5 322 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 TTC25Q96NG3 672 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 ACTR5Q9H9F9 607 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-209ENST00000537178 FGFR1OP2Q9NVK5 253 aa11.5□□□□□ -0.57
CLIP1-209ENST00000537178 NEURL1BA8MQ27 555 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 MAP3K7O43318 606 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 RPSAP08865 295 aaKnown RBP11.49□□□□□ -0.57
CLIP1-209ENST00000537178 IFNA8P32881 189 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 TMED2Q15363 201 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 TTLL7Q6ZT98 887 aa11.49□□□□□ -0.57
CLIP1-209ENST00000537178 CACTINQ8WUQ7 758 aaKnown RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms