RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 LTV1Q96GA3 475 aaPredicted RBP13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 DYDC2Q96IM9 177 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 TMEM237Q96Q45 408 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 DPH5Q9H2P9 285 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 NMRK1Q9NWW6 199 aa13.13□□□□□ -0.31
LIMCH1-213ENST00000511496 NPHP3-ACAD11A0A0J9YXS1 232 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 TMEM221A6NGB7 291 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 DAPK3O43293 454 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 GM2AP17900 193 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 SOGA3Q5TF21 947 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 EXOC3L1Q86VI1 746 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 MTMR8Q96EF0 704 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 SUCLG2Q96I99 432 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 GSDMAQ96QA5 445 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 NCKAP5LQ9HCH0 1330 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 SKIP12755 728 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 PDE6CP51160 858 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 MEA1Q16626 185 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 GALNTL6Q49A17 601 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 CCDC80Q76M96 950 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 SAPCD2Q86UD0 394 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 NOSTRINQ8IVI9 506 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 ARHGAP18Q8N392 663 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 ASAP3Q8TDY4 903 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 WDR60Q8WVS4 1066 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 SPIRE2Q8WWL2 714 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 ATXN2LQ8WWM7 1075 aaKnown RBP13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 UTP4Q969X6 686 aaKnown RBP13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 DBNDD2Q9BQY9 259 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 MYL10Q9BUA6 226 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 AP1M1Q9BXS5 423 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 SLC26A6Q9BXS9 759 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 THAP9Q9H5L6 903 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 TSKSQ9UJT2 592 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 GDAQ9Y2T3 454 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 DAAM1Q9Y4D1 1078 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 MYH7P12883 1935 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 CRYBG1Q9Y4K1 1723 aa13.12□□□□□ -0.31
LIMCH1-213ENST00000511496 TCP11X1B4DZS4 312 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 EIF4A3P38919 411 aaKnown RBP13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 SLCO1A2P46721 670 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 NLRP5P59047 1200 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 IFI35P80217 286 aaPredicted RBP13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 PLOD1Q02809 727 aaPredicted RBP13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 SLF2Q8IX21 1173 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 NOX5Q96PH1 765 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 RMND1Q9NWS8 449 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 MAGEC2Q9UBF1 373 aaPredicted RBP13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 DBF4Q9UBU7 674 aaPredicted RBP13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 ANKARQ7Z5J8 1434 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 LGALS16A8MUM7 142 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 BAG3O95817 575 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 KIF11P52732 1056 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 MTMR3Q13615 1198 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 GGT6Q6P531 493 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 NCCRP1Q6ZVX7 275 aaPredicted RBP13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 RIC3Q7Z5B4 369 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 VSIG1Q86XK7 387 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 CENPTQ96BT3 561 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 AGBL1Q96MI9 1066 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 LRCH1Q9Y2L9 728 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 MAP3K19Q56UN5 1328 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 NR5A1Q13285 461 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 KIAA0753Q2KHM9 967 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 NANOGNBQ7Z5D8 188 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 WAPLQ7Z5K2 1190 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 DIS3L2Q8IYB7 885 aaKnown RBP13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 LPIN2Q92539 896 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 MKL1Q969V6 931 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 FAM136AQ96C01 138 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 RWDD2AQ9UIY3 292 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 WDR37Q9Y2I8 494 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 MAP3K2Q9Y2U5 619 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 MROH2AA6NES4 1674 aa13.11□□□□□ -0.31
LIMCH1-213ENST00000511496 LSM1O15116 133 aaKnown RBP13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 TJP3O95049 919 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 MAP7D1Q3KQU3 841 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 SH2D4BQ5SQS7 431 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 ASRGL1Q7L266 308 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 LRRC8CQ8TDW0 803 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 DSCC1Q9BVC3 393 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 SPATA16Q9BXB7 569 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 NACA2Q9H009 215 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 BRD8Q9H0E9 1235 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 AZI2Q9H6S1 392 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 MAGEA13PA6NCF6 341 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 TRIM43BA6NCK2 446 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 SH2B2O14492 632 aaPredicted RBP13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 ECHS1P30084 290 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 SLC44A4Q53GD3 710 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 SCG3Q8WXD2 468 aaKnown RBP13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 DNAJC1Q96KC8 554 aaKnown RBP13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 NEUROD6Q96NK8 337 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 DDX47Q9H0S4 455 aaKnown RBP13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 TBC1D7Q9P0N9 293 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 ZNF180Q9UJW8 692 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 GMEB1Q9Y692 573 aa13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 RGS16O15492 202 aaPredicted RBP13.1□□□□□ -0.31
LIMCH1-213ENST00000511496 PALMO75781 387 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms