RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 ALX1Q15699 326 aa19.27■□□□□ 0.68
VIM-208ENST00000497849 FIBCD1Q8N539 461 aa19.27■□□□□ 0.68
VIM-208ENST00000497849 OTUD7AQ8TE49 926 aaPredicted RBP19.27■□□□□ 0.68
VIM-208ENST00000497849 IL17RAQ96F46 866 aa19.27■□□□□ 0.68
VIM-208ENST00000497849 C11orf84Q9BUA3 381 aaPredicted RBP19.27■□□□□ 0.68
VIM-208ENST00000497849 IGFLR1Q9H665 355 aa19.27■□□□□ 0.68
VIM-208ENST00000497849 PXMP2Q9NR77 195 aa19.27■□□□□ 0.68
VIM-208ENST00000497849 GFRA3O60609 400 aa19.26■□□□□ 0.67
VIM-208ENST00000497849 ADAM15Q13444 863 aa19.26■□□□□ 0.67
VIM-208ENST00000497849 CAMK1Q14012 370 aa19.26■□□□□ 0.67
VIM-208ENST00000497849 PKN1Q16512 942 aa19.26■□□□□ 0.67
VIM-208ENST00000497849 CELF3Q5SZQ8 465 aaKnown RBP19.26■□□□□ 0.67
VIM-208ENST00000497849 GPATCH4Q5T3I0 446 aaKnown RBP19.26■□□□□ 0.67
VIM-208ENST00000497849 MCF2L2Q86YR7 1114 aa19.26■□□□□ 0.67
VIM-208ENST00000497849 MSLNLQ96KJ4 702 aa19.26■□□□□ 0.67
VIM-208ENST00000497849 SPATA33Q96N06 139 aa19.26■□□□□ 0.67
VIM-208ENST00000497849 RC3H2Q9HBD1 1191 aaKnown RBP19.26■□□□□ 0.67
VIM-208ENST00000497849 FAM86C1Q9NVL1 165 aa19.26■□□□□ 0.67
VIM-208ENST00000497849 EYA4O95677 639 aa19.25■□□□□ 0.67
VIM-208ENST00000497849 FGAP02671 866 aa19.25■□□□□ 0.67
VIM-208ENST00000497849 ZXDAP98168 799 aa19.25■□□□□ 0.67
VIM-208ENST00000497849 SP2Q02086 613 aa19.25■□□□□ 0.67
VIM-208ENST00000497849 SUGP1Q8IWZ8 645 aaKnown RBP19.25■□□□□ 0.67
VIM-208ENST00000497849 FBXL6Q8N531 539 aa19.25■□□□□ 0.67
VIM-208ENST00000497849 RNPEPQ9H4A4 650 aa19.25■□□□□ 0.67
VIM-208ENST00000497849 LOC730098B7Z3J9 87 aa19.24■□□□□ 0.67
VIM-208ENST00000497849 CAND2O75155 1236 aa19.24■□□□□ 0.67
VIM-208ENST00000497849 CSPG5O95196 566 aa19.24■□□□□ 0.67
VIM-208ENST00000497849 GGPS1O95749 300 aa19.24■□□□□ 0.67
VIM-208ENST00000497849 SMIM10L2AP0DMW4 78 aa19.24■□□□□ 0.67
VIM-208ENST00000497849 SMIM10L2BP0DMW5 78 aa19.24■□□□□ 0.67
VIM-208ENST00000497849 C20orf194Q5TEA3 1177 aa19.24■□□□□ 0.67
VIM-208ENST00000497849 ADGRF4Q8IZF3 695 aa19.24■□□□□ 0.67
VIM-208ENST00000497849 APBB2Q92870 758 aa19.24■□□□□ 0.67
VIM-208ENST00000497849 CLP1Q92989 425 aaKnown RBP19.24■□□□□ 0.67
VIM-208ENST00000497849 PTPRZ1P23471 2315 aaPredicted RBP19.24■□□□□ 0.67
VIM-208ENST00000497849 PLXNA3P51805 1871 aa19.24■□□□□ 0.67
VIM-208ENST00000497849 ADGRA3Q8IWK6 1321 aa19.24■□□□□ 0.67
VIM-208ENST00000497849 H3BRB1 525 aa19.23■□□□□ 0.67
VIM-208ENST00000497849 OPLAHO14841 1288 aa19.23■□□□□ 0.67
VIM-208ENST00000497849 MMP1P03956 469 aa19.23■□□□□ 0.67
VIM-208ENST00000497849 HSPD1P10809 573 aaKnown RBP19.23■□□□□ 0.67
VIM-208ENST00000497849 UBA1P22314 1058 aaKnown RBP19.23■□□□□ 0.67
VIM-208ENST00000497849 VCPP55072 806 aaKnown RBP19.23■□□□□ 0.67
VIM-208ENST00000497849 CBX2Q14781 532 aaPredicted RBP19.23■□□□□ 0.67
VIM-208ENST00000497849 QRICH1Q2TAL8 776 aa19.23■□□□□ 0.67
VIM-208ENST00000497849 PDCD2LQ9BRP1 358 aa19.23■□□□□ 0.67
VIM-208ENST00000497849 TUT1Q9H6E5 874 aaKnown RBP19.23■□□□□ 0.67
VIM-208ENST00000497849 CLEC1BQ9P126 229 aa19.23■□□□□ 0.67
VIM-208ENST00000497849 MRPL11Q9Y3B7 192 aaKnown RBP19.23■□□□□ 0.67
VIM-208ENST00000497849 RWDD3Q9Y3V2 267 aa19.23■□□□□ 0.67
VIM-208ENST00000497849 CENPBP07199 599 aaPredicted RBP19.22■□□□□ 0.67
VIM-208ENST00000497849 HAND2P61296 217 aa19.22■□□□□ 0.67
VIM-208ENST00000497849 KCNV1Q6PIU1 500 aa19.22■□□□□ 0.67
VIM-208ENST00000497849 GPKOWQ92917 476 aaPredicted RBP eCLIP19.22■□□□□ 0.67
VIM-208ENST00000497849 ZKSCAN3Q9BRR0 538 aa19.22■□□□□ 0.67
VIM-208ENST00000497849 BCAS3Q9H6U6 928 aa19.22■□□□□ 0.67
VIM-208ENST00000497849 KIAA1671Q9BY89 1806 aa19.22■□□□□ 0.67
VIM-208ENST00000497849 DMDP11532 3685 aa19.22■□□□□ 0.67
VIM-208ENST00000497849 TTC3P53804 2025 aa19.22■□□□□ 0.67
VIM-208ENST00000497849 CFBP00751 764 aa19.21■□□□□ 0.67
VIM-208ENST00000497849 LGALS2P05162 132 aa19.21■□□□□ 0.67
VIM-208ENST00000497849 MYCLP12524 364 aaPredicted RBP19.21■□□□□ 0.67
VIM-208ENST00000497849 NDUFV1P49821 464 aa19.21■□□□□ 0.67
VIM-208ENST00000497849 HSD17B4P51659 736 aa19.21■□□□□ 0.67
VIM-208ENST00000497849 RRP1P56182 461 aaKnown RBP19.21■□□□□ 0.67
VIM-208ENST00000497849 FOXK2Q01167 660 aa19.21■□□□□ 0.67
VIM-208ENST00000497849 GHRHRQ02643 423 aa19.21■□□□□ 0.67
VIM-208ENST00000497849 FAM26DQ5JW98 314 aa19.21■□□□□ 0.67
VIM-208ENST00000497849 ADGRD2Q7Z7M1 963 aa19.21■□□□□ 0.67
VIM-208ENST00000497849 VSIG10LQ86VR7 867 aa19.21■□□□□ 0.67
VIM-208ENST00000497849 SMRP1Q8NCR6 262 aa19.21■□□□□ 0.67
VIM-208ENST00000497849 ZNF689Q96CS4 500 aaPredicted RBP19.21■□□□□ 0.67
VIM-208ENST00000497849 PLAGL2Q9UPG8 496 aa19.21■□□□□ 0.67
VIM-208ENST00000497849 DOCK5Q9H7D0 1870 aa19.2■□□□□ 0.66
VIM-208ENST00000497849 DNAJB1P25685 340 aa19.2■□□□□ 0.66
VIM-208ENST00000497849 SIGLEC14Q08ET2 396 aa19.2■□□□□ 0.66
VIM-208ENST00000497849 COASYQ13057 564 aa19.2■□□□□ 0.66
VIM-208ENST00000497849 DGKHQ86XP1 1220 aa19.2■□□□□ 0.66
VIM-208ENST00000497849 TBC1D10CQ8IV04 446 aa19.2■□□□□ 0.66
VIM-208ENST00000497849 IL31RAQ8NI17 732 aa19.2■□□□□ 0.66
VIM-208ENST00000497849 ASIC4Q96FT7 647 aa19.2■□□□□ 0.66
VIM-208ENST00000497849 ZFP91Q96JP5 570 aaPredicted RBP19.2■□□□□ 0.66
VIM-208ENST00000497849 JMJD4Q9H9V9 463 aa19.2■□□□□ 0.66
VIM-208ENST00000497849 HELLSQ9NRZ9 838 aa19.2■□□□□ 0.66
VIM-208ENST00000497849 SETD4Q9NVD3 440 aa19.2■□□□□ 0.66
VIM-208ENST00000497849 RIF1Q5UIP0 2472 aaKnown RBP19.19■□□□□ 0.66
VIM-208ENST00000497849 CHRNA1P02708 482 aa19.19■□□□□ 0.66
VIM-208ENST00000497849 ADAM17P78536 824 aa19.19■□□□□ 0.66
VIM-208ENST00000497849 PGM5Q15124 567 aa19.19■□□□□ 0.66
VIM-208ENST00000497849 MFSD6Q6ZSS7 791 aa19.19■□□□□ 0.66
VIM-208ENST00000497849 STOX1Q6ZVD7 989 aa19.19■□□□□ 0.66
VIM-208ENST00000497849 EFHBQ8N7U6 833 aa19.19■□□□□ 0.66
VIM-208ENST00000497849 PNMA1Q8ND90 353 aa19.19■□□□□ 0.66
VIM-208ENST00000497849 PLVAPQ9BX97 442 aa19.19■□□□□ 0.66
VIM-208ENST00000497849 MLXIPQ9HAP2 919 aa19.19■□□□□ 0.66
VIM-208ENST00000497849 DCHS1Q96JQ0 3298 aa19.19■□□□□ 0.66
VIM-208ENST00000497849 ZMYM6O95789 1325 aa19.19■□□□□ 0.66
VIM-208ENST00000497849 A0A0D9SFI3 127 aa19.18■□□□□ 0.66
VIM-208ENST00000497849 ENPP3O14638 875 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms