RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 KCNK18Q7Z418 384 aa16.9■□□□□ 0.3
SDF4-207ENST00000494748 C3orf20Q8ND61 904 aa16.9■□□□□ 0.3
SDF4-207ENST00000494748 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.9■□□□□ 0.3
SDF4-207ENST00000494748 CRNKL1Q9BZJ0 848 aaKnown RBP16.9■□□□□ 0.3
SDF4-207ENST00000494748 PPANQ9NQ55 473 aaKnown RBP16.9■□□□□ 0.3
SDF4-207ENST00000494748 CCDC172P0C7W6 258 aa16.9■□□□□ 0.3
SDF4-207ENST00000494748 HPDP32754 393 aaPredicted RBP16.9■□□□□ 0.3
SDF4-207ENST00000494748 KCTD19Q17RG1 926 aaPredicted RBP16.9■□□□□ 0.3
SDF4-207ENST00000494748 SLC9C1Q4G0N8 1177 aa16.9■□□□□ 0.3
SDF4-207ENST00000494748 CPVLQ9H3G5 476 aa16.9■□□□□ 0.3
SDF4-207ENST00000494748 GMNCA6NCL1 334 aa16.89■□□□□ 0.29
SDF4-207ENST00000494748 PRDX5P30044 214 aa16.89■□□□□ 0.29
SDF4-207ENST00000494748 TDRD12Q587J7 1177 aaKnown RBP16.89■□□□□ 0.29
SDF4-207ENST00000494748 ANKRD20A8PQ5CZ79 823 aa16.89■□□□□ 0.29
SDF4-207ENST00000494748 SV2BQ7L1I2 683 aa16.89■□□□□ 0.29
SDF4-207ENST00000494748 DYMQ7RTS9 669 aa16.89■□□□□ 0.29
SDF4-207ENST00000494748 DDX42Q86XP3 938 aaKnown RBP eCLIP16.89■□□□□ 0.29
SDF4-207ENST00000494748 TBC1D5Q92609 795 aa16.89■□□□□ 0.29
SDF4-207ENST00000494748 DYNLL2Q96FJ2 89 aa16.89■□□□□ 0.29
SDF4-207ENST00000494748 NUDT12Q9BQG2 462 aa16.89■□□□□ 0.29
SDF4-207ENST00000494748 LEMD3Q9Y2U8 911 aa16.89■□□□□ 0.29
SDF4-207ENST00000494748 DCDC2CA8MYV0 355 aa16.89■□□□□ 0.29
SDF4-207ENST00000494748 LRRC41Q15345 812 aa16.89■□□□□ 0.29
SDF4-207ENST00000494748 SFMBT2Q5VUG0 894 aa16.89■□□□□ 0.29
SDF4-207ENST00000494748 CACNA2D4Q7Z3S7 1137 aa16.89■□□□□ 0.29
SDF4-207ENST00000494748 MAATS1Q7Z4T9 603 aa16.89■□□□□ 0.29
SDF4-207ENST00000494748 TMOD1P28289 359 aa16.88■□□□□ 0.29
SDF4-207ENST00000494748 PARP10Q53GL7 1025 aa16.88■□□□□ 0.29
SDF4-207ENST00000494748 C12orf60Q5U649 245 aa16.88■□□□□ 0.29
SDF4-207ENST00000494748 KLHL7Q8IXQ5 586 aa16.88■□□□□ 0.29
SDF4-207ENST00000494748 FUKQ8N0W3 1084 aa16.88■□□□□ 0.29
SDF4-207ENST00000494748 TACO1Q9BSH4 297 aaKnown RBP16.88■□□□□ 0.29
SDF4-207ENST00000494748 FGFBP2Q9BYJ0 223 aa16.88■□□□□ 0.29
SDF4-207ENST00000494748 BTNL10A8MVZ5 291 aa16.88■□□□□ 0.29
SDF4-207ENST00000494748 NONOQ15233 471 aaKnown RBP eCLIP16.88■□□□□ 0.291e-7■■■■■ 26.8
SDF4-207ENST00000494748 KRT25Q7Z3Z0 450 aa16.88■□□□□ 0.29
SDF4-207ENST00000494748 NEK8Q86SG6 692 aa16.88■□□□□ 0.29
SDF4-207ENST00000494748 LRRC57Q8N9N7 239 aa16.88■□□□□ 0.29
SDF4-207ENST00000494748 STK17AQ9UEE5 414 aa16.88■□□□□ 0.29
SDF4-207ENST00000494748 MINPP1Q9UNW1 487 aa16.88■□□□□ 0.29
SDF4-207ENST00000494748 NHSQ6T4R5 1651 aa16.88■□□□□ 0.29
SDF4-207ENST00000494748 PDHBP11177 359 aa16.88■□□□□ 0.29
SDF4-207ENST00000494748 LARP4BQ92615 738 aaKnown RBP16.88■□□□□ 0.29
SDF4-207ENST00000494748 GANQ9H2C0 597 aa16.88■□□□□ 0.29
SDF4-207ENST00000494748 AIPL1Q9NZN9 384 aa16.88■□□□□ 0.29
SDF4-207ENST00000494748 GOLGA8HP0CJ92 632 aa16.87■□□□□ 0.29
SDF4-207ENST00000494748 GNAQP50148 359 aa16.87■□□□□ 0.29
SDF4-207ENST00000494748 PPARDQ03181 441 aa16.87■□□□□ 0.29
SDF4-207ENST00000494748 LACTB2Q53H82 288 aaPredicted RBP16.87■□□□□ 0.29
SDF4-207ENST00000494748 CYB5D1Q6P9G0 228 aa16.87■□□□□ 0.29
SDF4-207ENST00000494748 PROCA1Q8NCQ7 364 aaPredicted RBP16.87■□□□□ 0.29
SDF4-207ENST00000494748 ACTR5Q9H9F9 607 aaPredicted RBP16.87■□□□□ 0.29
SDF4-207ENST00000494748 ECM1Q16610 540 aa16.87■□□□□ 0.29
SDF4-207ENST00000494748 RAD54LQ92698 747 aa16.87■□□□□ 0.29
SDF4-207ENST00000494748 DNAJC19Q96DA6 116 aa16.87■□□□□ 0.29
SDF4-207ENST00000494748 LSM14BQ9BX40 385 aaKnown RBP16.87■□□□□ 0.29
SDF4-207ENST00000494748 GOLPH3Q9H4A6 298 aa16.87■□□□□ 0.29
SDF4-207ENST00000494748 GCOM1H8Y6P7 765 aaPredicted RBP16.87■□□□□ 0.29
SDF4-207ENST00000494748 FGFR1OPO95684 399 aaKnown RBP16.87■□□□□ 0.29
SDF4-207ENST00000494748 MYZAPP0CAP1 466 aa16.87■□□□□ 0.29
SDF4-207ENST00000494748 FXR2P51116 673 aaKnown RBP eCLIP16.87■□□□□ 0.29
SDF4-207ENST00000494748 POLR2FP61218 127 aaKnown RBP16.87■□□□□ 0.29
SDF4-207ENST00000494748 TNNC1P63316 161 aa16.87■□□□□ 0.29
SDF4-207ENST00000494748 SETQ01105 290 aaPredicted RBP16.87■□□□□ 0.29
SDF4-207ENST00000494748 CUL1Q13616 776 aa16.87■□□□□ 0.29
SDF4-207ENST00000494748 KIAA0753Q2KHM9 967 aa16.87■□□□□ 0.29
SDF4-207ENST00000494748 TMEM119Q4V9L6 283 aa16.87■□□□□ 0.29
SDF4-207ENST00000494748 PROM2Q8N271 834 aa16.87■□□□□ 0.29
SDF4-207ENST00000494748 ACTRT1Q8TDG2 376 aa16.87■□□□□ 0.29
SDF4-207ENST00000494748 TBCKQ8TEA7 893 aa16.87■□□□□ 0.29
SDF4-207ENST00000494748 RAPGEF5Q92565 580 aa16.87■□□□□ 0.29
SDF4-207ENST00000494748 SEC16BQ96JE7 1060 aa16.87■□□□□ 0.29
SDF4-207ENST00000494748 BSDC1Q9NW68 430 aaPredicted RBP16.87■□□□□ 0.29
SDF4-207ENST00000494748 COL4A3BPQ9Y5P4 624 aa16.87■□□□□ 0.29
SDF4-207ENST00000494748 SLC37A4O43826 429 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 CAVIN4Q5BKX8 364 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 CHADLQ6NUI6 762 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 TATDN2Q93075 761 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 CALML4Q96GE6 196 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 TMEM47Q9BQJ4 181 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 SPZ1Q9BXG8 430 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 NUCKS1Q9H1E3 243 aaKnown RBP16.86■□□□□ 0.29
SDF4-207ENST00000494748 MCM9Q9NXL9 1143 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 NENFQ9UMX5 172 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 SNED1Q8TER0 1413 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 KIF4AO95239 1232 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 USP11P51784 963 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 MARSP56192 900 aaKnown RBP16.86■□□□□ 0.29
SDF4-207ENST00000494748 SEC14L1Q92503 715 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 DDX12PQ92771 950 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 HAUS2Q9NVX0 235 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 SUFUQ9UMX1 484 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 BACH1O14867 736 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 BIRC3Q13489 604 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 AGBL2Q5U5Z8 902 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 TRIM59Q8IWR1 403 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 MAGEC3Q8TD91 643 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 RIC8AQ9NPQ8 531 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 TMEM260Q9NX78 707 aa16.86■□□□□ 0.29
SDF4-207ENST00000494748 ADAMTS1Q9UHI8 967 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms