RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 TDRD3Q9H7E2 651 aaKnown RBP18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 COL11A2P13942 1736 aaPredicted RBP18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 MEIS1O00470 390 aa18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 COASYQ13057 564 aa18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 VWA3BQ502W6 1294 aa18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 GPATCH4Q5T3I0 446 aaKnown RBP18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 SIAH1Q8IUQ4 282 aa18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 FAM114A1Q8IWE2 563 aa18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 LRRC1Q9BTT6 524 aa18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 ZNHIT6Q9NWK9 470 aaKnown RBP18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 ALDH1B1P30837 517 aa18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 ZBED6P86452 979 aa18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 TMEM119Q4V9L6 283 aa18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 DNAJC19Q96DA6 116 aa18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 SELENOOQ9BVL4 669 aa18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 SUGT1Q9Y2Z0 365 aa18.29■□□□□ 0.52
CCDC88B-210ENST00000494566 POTEFA5A3E0 1075 aa18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 ZSCAN5CA6NGD5 496 aaPredicted RBP18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 ECE2O60344 883 aa18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 POTEIP0CG38 1075 aa18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 PDIA5Q14554 519 aa18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 MEA1Q16626 185 aa18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 AOC3Q16853 763 aa18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 PPP4R3AQ6IN85 833 aa18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 POTEGQ6S5H5 508 aa18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 POTEEQ6S8J3 1075 aa18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 AFAP1L1Q8TED9 768 aa18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 HNRNPLLQ8WVV9 542 aaKnown RBP18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 MASTLQ96GX5 879 aa18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 CCDC42Q96M95 316 aa18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 BCAS3Q9H6U6 928 aa18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 HPCAL4Q9UM19 191 aa18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 PACSIN2Q9UNF0 486 aaPredicted RBP18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 ARFGEF1Q9Y6D6 1849 aa18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 HOXA13P31271 388 aaPredicted RBP18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 ANO3Q9BYT9 981 aa18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 PANK4Q9NVE7 773 aa18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 SAMM50Q9Y512 469 aa18.28■□□□□ 0.52
CCDC88B-210ENST00000494566 POTEB2H3BUK9 544 aa18.27■□□□□ 0.52
CCDC88B-210ENST00000494566 ICA1Q05084 483 aa18.27■□□□□ 0.52
CCDC88B-210ENST00000494566 PRR16Q569H4 304 aa18.27■□□□□ 0.52
CCDC88B-210ENST00000494566 RRAGAQ7L523 313 aa18.27■□□□□ 0.52
CCDC88B-210ENST00000494566 ARHGAP20Q9P2F6 1191 aa18.27■□□□□ 0.52
CCDC88B-210ENST00000494566 TRAF5O00463 557 aa18.27■□□□□ 0.52
CCDC88B-210ENST00000494566 KRT86O43790 486 aa18.27■□□□□ 0.52
CCDC88B-210ENST00000494566 MED24O75448 989 aa18.27■□□□□ 0.52
CCDC88B-210ENST00000494566 ATP1A2P50993 1020 aa18.27■□□□□ 0.52
CCDC88B-210ENST00000494566 RRP1BQ14684 758 aaKnown RBP18.27■□□□□ 0.52
CCDC88B-210ENST00000494566 MUM1L1Q5H9M0 696 aa18.27■□□□□ 0.52
CCDC88B-210ENST00000494566 LRRC55Q6ZSA7 311 aa18.27■□□□□ 0.52
CCDC88B-210ENST00000494566 HAUS4Q9H6D7 363 aa18.27■□□□□ 0.52
CCDC88B-210ENST00000494566 ATF5Q9Y2D1 282 aaPredicted RBP18.27■□□□□ 0.52
CCDC88B-210ENST00000494566 SIK3Q9Y2K2 1263 aa18.27■□□□□ 0.52
CCDC88B-210ENST00000494566 NRXN2Q9P2S2 1712 aa18.27■□□□□ 0.51
CCDC88B-210ENST00000494566 PVALEFA0A1B0GWK0 134 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 CYLC1P35663 651 aaPredicted RBP18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 PDE6BP35913 854 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 GUF1Q8N442 669 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 SH2D3CQ8N5H7 860 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 ZDHHC15Q96MV8 337 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 ERGIC2Q96RQ1 377 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 LRRC53A6NM62 1247 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 F5H6K3 240 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 AKR1B10O60218 316 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 CCT5P48643 541 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 PSMC6P62333 389 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 KLRC3Q07444 240 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 KIF5AQ12840 1032 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 GPBP1Q86WP2 473 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 CYP2W1Q8TAV3 490 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 FAM71BQ8TC56 605 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 SIPA1L1O43166 1804 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 MEIS2O14770 477 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 PLA2G4BP0C869 781 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 GFPT1Q06210 699 aaPredicted RBP18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 ORC2Q13416 577 aaPredicted RBP18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 FAM26FQ5R3K3 315 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 DACT2Q5SW24 774 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 MYOCDQ8IZQ8 938 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 MTMR8Q96EF0 704 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 SALL4Q9UJQ4 1053 aa18.26■□□□□ 0.51
CCDC88B-210ENST00000494566 EIF3CLB5ME19 914 aaKnown RBP18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 EIF4A3P38919 411 aaKnown RBP18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 SF3A3Q12874 501 aaKnown RBP eCLIP18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 TDRD12Q587J7 1177 aaKnown RBP18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 HERC4Q5GLZ8 1057 aaPredicted RBP18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 PPP1R18Q6NYC8 613 aa18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 IFT81Q8WYA0 676 aa18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 SECISBP2LQ93073 1101 aaKnown RBP18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 AKT1S1Q96B36 256 aa18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 EIF3CQ99613 913 aaKnown RBP18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 NUP58Q9BVL2 599 aa18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 GBP3Q9H0R5 595 aa18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 GOLPH3Q9H4A6 298 aa18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 PI4KBQ9UBF8 816 aa18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 GH2P01242 217 aa18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 KRT83P78385 493 aa18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 RASSF7Q02833 373 aa18.25■□□□□ 0.51
CCDC88B-210ENST00000494566 CYP4A11Q02928 519 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms